| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | pSIJ663_pHT315_araE_xy | = 5614 | 4 (0.000) | 13 (0.000) | 11/228 | NT | 79.0% | intergenic (+883/–) | ampR/– | –/– |
| ? | pSIJ663_pHT315_araE_xy | 9532 = | 3 (0.000) | intergenic (+4801/–) | ampR/– | –/– | |||||
CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAA > pSIJ663_pHT315_araE_xy/5476‑5751 | cgaagccTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTA > 2:263830‑M1/4‑139 (MQ=255)cgaagccTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTA < 6:93295‑M1/136‑1 (MQ=255) aaaaAGCCAGGAAGGCTGACTTTTTAGTGTTAGTTGCCTTTTGATGGCCTTTTGCTCACATGTTGTTTCCTGCGTTTTCGCATGATTCTGTGGATAAAGGTTTTACCGCATTTGATTGATCTGTTATGACACaataatg < 8:132058/139‑3 (MQ=255) cGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAgcg > 4:401897/1‑137 (MQ=255) tACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagt < 6:223250‑M1/138‑37 (MQ=255) ggcttttgctggccttttgctcaCATGTTCTTTCCTGCGTTATCCCCTTATTATGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgcctcagccgaacgaccgagcgcagcgagtcagtgagcgagg < 2:31225‑M1/137‑49 (MQ=255) ttgctCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaccgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcc > 2:235153‑M1/1‑75 (MQ=255) aTGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgca < 4:413644‑M1/139‑73 (MQ=255) cTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGa < 1:263830/139‑1 (MQ=255) cTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgcccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaacccgcctct > 8:140298‑M1/1‑57 (MQ=255) cTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccga < 5:186671‑M1/138‑100 (MQ=255) tgtgGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgagg > 5:314254‑M1/1‑38 (MQ=255) tgtgGATAACCGTATTACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgagg < 6:314254‑M1/86‑49 (MQ=255) tgGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCa > 1:110992/1‑138 (MQ=255) ttACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgccca < 7:21184‑M1/89‑66 (MQ=255) ttACCGCCTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgccca > 8:21184‑M1/1‑24 (MQ=255) ccTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacga > 6:178218‑M1/1‑18 (MQ=255) ccTTTGAGTGAGCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacga > 1:107955‑M1/1‑18 (MQ=255) tttGAGTGAGCTGATAccgctcgccgcagccgaacgaccgcgcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgaca > 4:247448‑M1/1‑16 (MQ=255) agCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttccc > 5:258800‑M1/1‑8 (MQ=255) agCTGATAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcac > 7:147542‑M1/1‑8 (MQ=255) tAccgctcgccgcagccgaacgaccgagcgcagcgagtcagtgagcgaggaagcggaagagcgcccaatacgcaaaccgcctctccccgcgcgttggccgattcattaatgcagctggcacgacaggtttcccgactg > 8:204062‑M1/1‑2 (MQ=255) tATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATaaa > 8:288571/1‑139 (MQ=255) | CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTCGAAACAAACGCATTTGACCAAACAAGCAGACAAAAAAGGCGATGGGATAGATCACCATTTCATAAGTATTGATAGGTGCGTTTAAAACACCGATAAA > pSIJ663_pHT315_araE_xy/5476‑5751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |