| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 333,932 | G→A | 81.0% | L16L (CTC→CTT) | mdr ← | multidrug‑efflux transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 333,932 | 0 | G | A | 81.0% | 175.7 / 40.3 | 84 | L16L (CTC→CTT) | mdr | multidrug‑efflux transporter |
| Reads supporting (aligned to +/- strand): ref base G (8/8); new base A (37/31); total (45/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.02e-01 | |||||||||||
GCCACCATATAGGATGCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTGATTGTTGAATATCTCGATTATCAAGAT > BS168_reference_genome/333804‑334062 | gCCACCATATAGGATGCCGTCACCCAGGCAAATTTATCGAACCTTCCAAGATCGGCTACGATATTGCCCATCGAGGTGTCAACAATCCTATTGTCCATTGCCCACATCAAGATGCCCAGCAGGAGACCAAGGACcaca > 1:42160/1‑138 (MQ=255) atatAGGATGCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTtgg > 8:351083/1‑139 (MQ=255) ttggATGCCGTCAACCAGGCAAATTTATTGAATCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGTCAACAAACTTATTGTCCATTTCAGACATCAAGATGCCAATCAGGAGACCAAGGACCACAAAATtgggg < 2:42160/136‑3 (MQ=255) taGGATGCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTtggtg < 3:233109/138‑1 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTGTTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCt > 7:66319/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGCCATCAAGATGCCCAGCAGGAGCCCAAGGACCACAAATTTGGTGGAAGCCt > 3:333765/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGTCCAAGGACCACAAATTTGGTGGAAGCCt > 4:104471/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGc > 2:311183/1‑137 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGc < 1:311183/137‑1 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCt > 4:139502/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGccg > 2:404472/1‑138 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGc < 4:147350/137‑1 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGc > 3:147350/1‑137 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCt > 2:335707/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCt > 4:334066/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAAGTTGGTGGAGGCCt > 7:125977/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCAATGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCt > 4:106977/1‑139 (MQ=255) gCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTACATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAAGTTGGTGTAAGCCt > 4:275396/1‑139 (MQ=255) cGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGCCCGAGGACCACAAATTTGGTGGAAGCCTGt > 8:387118/1‑139 (MQ=255) cGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAg > 6:319358/1‑114 (MQ=255) cGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAg < 5:319358/114‑1 (MQ=255) cGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGt > 6:322253/1‑139 (MQ=255) tCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGttt < 6:69092/139‑1 (MQ=255) tCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGttt < 4:242240/139‑1 (MQ=255) tCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGttt < 5:322253/139‑1 (MQ=255) aCCGAGGCAATTTTAGCGTAGCTTCCAAGATCGGCTACGTTATTGCCCATCGAGGTGGCAACTATCGTATTGGCCATTGCAGACTTCAAGATGCCCAGCAGGAGCCCAAGGCCCACAAATTTGGGGGAAGCCTGTTTTg < 6:75611/139‑1 (MQ=255) cAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCtg < 3:233792/139‑1 (MQ=255) gCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCtgttg > 2:297368/1‑139 (MQ=255) aaaTTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCtgttgtt < 7:381427/139‑1 (MQ=255) tttATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTtgtg < 3:139502/139‑1 (MQ=255) tttATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTtgtg < 7:351083/139‑1 (MQ=255) tttATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTtgtg < 8:41963/139‑1 (MQ=255) tCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTcc < 1:297368/138‑1 (MQ=255) tCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCa < 8:111382/139‑1 (MQ=255) aGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTAcct < 3:149390/139‑1 (MQ=255) ggCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCctct > 3:391945/1‑139 (MQ=255) cGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACt < 5:368831/138‑1 (MQ=255) tGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACAACAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTCGAAGCCGGTTTTGCTGTTGTTGTGTCCATTTGTACTACCTCCGCTTACTTTTGTAt > 4:12818/1‑139 (MQ=255) gCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATg > 4:341324/1‑139 (MQ=255) gCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATg > 4:404771/1‑139 (MQ=255) gCCAATCGAGGTGGCAACAATCGTATTGTCCATTGCATACATCAAGATGCGCAGCAGGAGACCAAGGAACACAAATTTGGTGTAAGCCTGTTTTGATGTTGTTGTGTAGATGTGTTCTACCTCCTCTTACTTTTCTATg > 8:123995/1‑139 (MQ=255) cccATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGt < 7:269403/139‑1 (MQ=255) cccATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGt < 7:232088/139‑1 (MQ=255) cccATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGt < 1:63035/139‑1 (MQ=255) cccATAGCGGTGGCATCAATCTTATTGTACATTGCAGACATCAAGATGCCCAGCAGGAGACCATGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGt < 7:232099/139‑1 (MQ=255) cgcgGTGGCAACAATCGTATTTTCAATTTCAGACATCAAGATCCCCAGCAGGAGACAAAGGACCACAAATTAGGTGGAAGCCAGTTTTGATGTTGGTGTCTCCATTTGTTATCCATACTCTAACTTTACTAAGTAAGtt > 8:232099/1‑139 (MQ=255) cgcgGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCAAAAATTTGGTGGAAGCCTTTTTTGCTGTTGTTGTGTCAATTTGTTCTACATCCTCTTAATTTTCTATTTAAGtt > 8:232088/1‑139 (MQ=255) cgcgGTGGCAACAATCGTATTCTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTTGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACATCCTCTTACTTTTCTATGTAAGtt > 3:101539/1‑139 (MQ=255) tGGCAAGAATCGTATTGTCGATTGCAGACATCTAGATGCCCAGCAGGAGACCGTGGACCTCATATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGat < 4:194935/139‑1 (MQ=255) tGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGTCCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGat < 3:104471/139‑1 (MQ=255) tGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCAt < 2:295764/100‑1 (MQ=255) tGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCAt > 1:295764/1‑100 (MQ=255) tGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGat < 1:404472/139‑1 (MQ=255) tGGCAACAATCGTATTGTCCATTGCAGACAAAAAGATGCCCAGCAGGAGACCGACGACCACAAATTAGGTGGAAGCCTGTTTTGATGTTGTTGTGTCCATTTGTTCTACCTACTCTTACATTTCTATGTAAGTTCTGa > 3:194935/1‑138 (MQ=255) gCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGatat < 8:66319/139‑1 (MQ=255) gCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGatat < 1:335707/139‑1 (MQ=255) gCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGatat < 3:341324/139‑1 (MQ=255) aacaaTCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCa < 3:32363/139‑1 (MQ=255) gTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGataa < 3:12818/138‑1 (MQ=255) ttGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGt > 7:248617/1‑139 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCt < 6:125792/69‑1 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCt > 5:125792/1‑69 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTg < 8:323064/62‑1 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTg > 7:323064/1‑62 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTcc < 1:64381/81‑1 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTcc > 2:64381/1‑81 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGttt > 2:11641/1‑138 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGttt > 3:317295/1‑138 (MQ=255) tCCATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTg < 4:391945/139‑1 (MQ=255) cATTGCAGACATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTGAt > 7:306783/1‑139 (MQ=255) aCATCAAGATGCCCAGCAGGAGCCCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTtgtg > 6:272829/1‑68 (MQ=255) aCATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTg < 6:102882/57‑1 (MQ=255) aCATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTg > 5:102882/1‑57 (MQ=255) aCATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTtgtg < 5:272829/68‑1 (MQ=255) aCATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTTTGTAAGTTCTGATTTAATGATAATATTTTGATTGTTTAat > 1:346599/1‑139 (MQ=255) aCATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTGACTTTTCTATGTAAGTTCTGATATCATGATTATAGTTTGATTTTTGaa > 2:99005/1‑138 (MQ=255) aCATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCAACTTACATTTGTATGTAAGTTCTGATATCATGATAATATATAGATTGTTGaa > 4:263991/1‑138 (MQ=255) aCATCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACATCCTCTAACTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTGATTTTTGaa > 4:328590/1‑138 (MQ=255) aTCAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTCCTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTGATTGTTGAatat > 6:321522/1‑139 (MQ=255) cAAGATGCCCAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTGATTGTTGAATAtct > 8:291962/1‑139 (MQ=255) ccAGCAGGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTATGTTCTGATATCATGATAATAGTTTGATTGTTGAATATCTCGATTAt > 3:302917/1‑138 (MQ=255) agGAGACCAAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTGATTGTTGAATATCTCGATTATCAAGAt < 4:333765/139‑1 (MQ=255) cGAGGACCACAAATTTGATGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGat < 5:33022/88‑1 (MQ=255) cGAGGACCACAAATTTGATGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGat > 6:33022/1‑88 (MQ=255) | GCCACCATATAGGATGCCGTCACCCAGGCAAATTTATCGAAGCTTCCAAGATCGGCTACGATATTGCCCATCGCGGTGGCAACAATCGTATTGTCCATTGCAGACATCAAGATGCCCAGCAGGAGACCGAGGACCACAAATTTGGTGGAAGCCTGTTTTGCTGTTGTTGTGTCCATTTGTTCTACCTCCTCTTACTTTTCTATGTAAGTTCTGATATCATGATAATAGTTTGATTGTTGAATATCTCGATTATCAAGAT > BS168_reference_genome/333804‑334062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |