Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | BS168_reference_genome | 1,045,961 | T→C | 6.1% | V215A (GTT→GCT) | bmrC → | efflux ABC transporter (ATP‑binding protein) |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BS168_reference_genome | 1,045,961 | 0 | T | C | 6.1% | 198.4 / 4.4 | 65 | V215A (GTT→GCT) | bmrC | efflux ABC transporter (ATP‑binding protein) |
Reads supporting (aligned to +/- strand): ref base T (41/20); new base C (2/2); total (43/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.99e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01 |
AGTCTATATGGAAGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGTCGGCGCAAGCTATCTGATTGGGCT > BS168_reference_genome/1045846‑1046099 | aGTCTATATGGAAGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGc < 6:378801/138‑1 (MQ=255) ctCTATATTGAACGAAAATTCCTGTGCCGGTTACTGCGGCCCAAAACCCCTTCGGGGCGCTGAATGCCAGACTGCAGGAATCTGGTTCACGCGGGCGGGTGATTCGCGCGTATGTTCAGGCAACAAACGATGTTCGCCg < 2:147442/138‑1 (MQ=255) tatGGAAGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGttt > 4:249516/1‑138 (MQ=255) gAAGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatga < 6:359761/139‑1 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaa > 5:94069/1‑139 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaa > 3:376701/1‑139 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaa > 3:298964/1‑139 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaa > 4:341866/1‑139 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaa > 4:377426/1‑139 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaa > 4:51049/1‑139 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaa > 5:84209/1‑139 (MQ=255) aGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGAGGTTCGCCGGTTTaatgaaa > 7:332260/1‑139 (MQ=255) gTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTaatgaaat < 6:94069/139‑1 (MQ=255) tAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGc > 5:387007/1‑124 (MQ=255) tAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGc < 6:387007/124‑1 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCg < 8:96452/121‑1 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCg > 4:383458/1‑121 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCg > 7:102690/1‑121 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCg > 7:96452/1‑121 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCg < 3:383458/121‑1 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCg < 8:102690/121‑1 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGAc > 8:42951/1‑139 (MQ=255) aaaTTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGAc > 7:53111/1‑139 (MQ=255) gAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATg > 8:136725/1‑139 (MQ=255) gTTTACTGAGGCCCAAAACGCGTTCGGGGTGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTAt > 8:249195/1‑139 (MQ=255) gTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTAt > 3:25620/1‑139 (MQ=255) cTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGaa < 3:377426/139‑1 (MQ=255) ggCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGaaaaa > 1:188631/1‑138 (MQ=255) gCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAata > 7:276970/1‑139 (MQ=255) cccAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGc > 6:262804/1‑98 (MQ=255) cccAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGc < 5:262804/98‑1 (MQ=255) cccAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAatat > 3:276146/1‑139 (MQ=255) cccAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAatat > 3:253704/1‑139 (MQ=255) cccAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAatat > 7:361699/1‑139 (MQ=255) cccAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAatat > 4:206464/1‑139 (MQ=255) cgTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGc > 3:164849/1‑139 (MQ=255) cgTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTGTATCAGAAAAATATGAAAGTGGc > 3:170954/1‑139 (MQ=255) gTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCt < 4:276146/139‑1 (MQ=255) ggggCGGTGTATGTCAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTa < 2:188631/139‑1 (MQ=255) aaTGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTc < 3:341866/137‑1 (MQ=255) aaTGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCa < 4:253704/138‑1 (MQ=255) cAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGaaa < 5:360425/115‑1 (MQ=255) cAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGaaa > 6:360425/1‑115 (MQ=255) agTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAg > 2:274395/1‑139 (MQ=255) agTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGAGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAg > 3:396792/1‑139 (MQ=255) tGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTa < 3:298570/120‑1 (MQ=255) tGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTa > 4:298570/1‑120 (MQ=255) gAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACgg > 5:35741/1‑139 (MQ=255) gAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTAGATCCGACgg > 1:258103/1‑139 (MQ=255) tCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTa > 5:175401/1‑138 (MQ=255) tGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTaaaa > 7:410237/1‑139 (MQ=255) tGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTaaaa > 1:130028/1‑139 (MQ=255) tGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTaaaa > 1:7501/1‑139 (MQ=255) tGTTTCAGGCGTGCGGGTGATTAGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATAGGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTaaaa > 1:301079/1‑139 (MQ=255) tttCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACt > 2:57956/1‑139 (MQ=255) ggCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGa < 7:82204/107‑1 (MQ=255) ggCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGa > 8:82204/1‑107 (MQ=255) ggCGTGCGGGTGATTCGCGCGTATGCTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGAc < 7:302369/65‑1 (MQ=255) ggCGTGCGGGTGATTCGCGCGTATGCTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGAc < 7:296795/65‑1 (MQ=255) ggCGTGCGGGTGATTCGCGCGTATGCTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGAc > 8:296795/1‑65 (MQ=255) ggCGTGCGGGTGATTCGCGCGTATGCTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGAc > 8:302369/1‑65 (MQ=255) gCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGt > 5:374245/1‑139 (MQ=255) tGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGTCGGCGCAAg < 1:19019/139‑1 (MQ=255) tGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGTCGGCGCAAGCTATCTGATTggg < 4:298964/139‑1 (MQ=255) gTTCAGGAAAAAAACGATGTTCGCGGTTTTAATCAATTGACGGCTTATGTTAATCAGAAAAATATTAATGTGCGTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGTCGGCGCAAGCTATCTGATTggg < 2:258103/138‑1 (MQ=255) ttCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGTCGGCGCAAGCTATCTGATTGGGCt < 5:225307/139‑1 (MQ=255) ttCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGTCGGCGCAAGCTATCTGATTGGGCt < 3:297112/139‑1 (MQ=255) | AGTCTATATGGAAGTAAAATTCATGAGCGGTTTACTGAGGCCCAAAACGCGTTCGGGGCGCTGAATGACAGAGTGCTGGAATCTGTTTCAGGCGTGCGGGTGATTCGCGCGTATGTTCAGGAAACAAACGATGTTCGCCGGTTTAATGAAATGACCGCTGATGTTTATCAGAAAAATATGAAAGTGGCTTTTATTGATTCACTGTTTGAGCCGACGGTAAAACTGCTTGTCGGCGCAAGCTATCTGATTGGGCT > BS168_reference_genome/1045846‑1046099 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |