Predicted mutation
evidence seq id position mutation annotation gene description
RA BS168_reference_genome 557,870 (T)5→6 intergenic (+421/‑3) yddT → / → ydzN putative exported phage protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BS168_reference_genome557,8651.T100.0% 345.7 / NA 99intergenic (+416/‑8)yddT/ydzNputative exported phage protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (48/51);  total (48/51)

Only 100 of 106 total aligned reads displayed.

TGAAAGTAATGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑TTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCTTCTG  >  BS168_reference_genome/557729‑557987
                                                                                                                                         |                                                                                                                          
tgAAAGTAATGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑tt                                                                                                                          >  7:166788/1‑139 (MQ=255)
tgAAAGTAATGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑tt                                                                                                                          >  2:240998/1‑139 (MQ=255)
tgAAAGTAATGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑tt                                                                                                                          >  7:61385/1‑139 (MQ=255)
  aaaGTAATGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑tttt                                                                                                                        >  4:53728/1‑139 (MQ=255)
      tAATGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑ttttttaa                                                                                                                    <  6:68641/139‑4 (MQ=255)
        aTGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑ttttttaatt                                                                                                                  >  5:91152/1‑134 (MQ=255)
           aTTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCg                                                                                                                <  7:336507/139‑1 (MQ=255)
            tttGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGATAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCg                                                                                                                <  5:35998/138‑1 (MQ=255)
              tGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGtt                                                                                                              <  5:151077/138‑1 (MQ=255)
                tAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTg                                                                                                             >  7:311797/1‑137 (MQ=255)
                     tCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTaaa                                                                                                      >  1:268068/1‑139 (MQ=255)
                            aGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTc                                                                                                <  6:116952/138‑1 (MQ=255)
                            aGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTc                                                                                                <  8:166788/138‑1 (MQ=255)
                              aaaTGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAAt                                                                                             <  1:142222/139‑1 (MQ=255)
                               aaGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAAt                                                                                             <  7:340140/138‑1 (MQ=255)
                               aaGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAAt                                                                                             <  8:108041/138‑1 (MQ=255)
                                  gTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGttt                                                                                         >  1:170369/1‑139 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTTTACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        >  1:256574/1‑139 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        >  3:49190/1‑139 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        >  2:246377/1‑139 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        >  8:157360/1‑139 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        <  1:240998/139‑1 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        >  8:202236/1‑139 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        >  8:35980/1‑139 (MQ=255)
                                   tttAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGtttt                                                                                        <  3:76358/139‑1 (MQ=255)
                                        taTTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGta                                                                                   <  2:275192/138‑1 (MQ=255)
                                        gATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGta                                                                                   <  3:305415/139‑1 (MQ=255)
                                            aGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTAtag                                                                                <  4:153245/138‑1 (MQ=255)
                                             gATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTAtagta                                                                              <  3:53728/139‑1 (MQ=255)
                                             gATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTAtag                                                                                >  7:220510/1‑137 (MQ=255)
                                             gATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTAtag                                                                                >  1:91411/1‑137 (MQ=255)
                                                 ttGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCa                                                                           <  1:128018/138‑1 (MQ=255)
                                                  tGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         >  4:224678/1‑139 (MQ=255)
                                                  tGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         >  8:64984/1‑139 (MQ=255)
                                                  tGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         >  2:9376/1‑139 (MQ=255)
                                                   gAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         <  8:61385/138‑1 (MQ=255)
                                                   gAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         <  4:49190/138‑1 (MQ=255)
                                                     aaaaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTggg                                                                      <  2:91411/139‑1 (MQ=255)
                                                     aaaaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTggg                                                                      <  7:157360/139‑1 (MQ=255)
                                                      aaaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGa                                                                     <  3:226615/139‑1 (MQ=255)
                                                      aaaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGa                                                                     <  1:134639/139‑1 (MQ=255)
                                                      aaaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGa                                                                     <  8:311797/139‑1 (MQ=255)
                                                      aaaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGa                                                                     <  4:370701/139‑1 (MQ=255)
                                                       aaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGAt                                                                    <  6:223155/139‑1 (MQ=255)
                                                       aaTTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGAt                                                                    <  2:268068/139‑1 (MQ=255)
                                                                   tttCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         <  8:307460/122‑1 (MQ=255)
                                                                   tttCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         >  7:307460/1‑122 (MQ=255)
                                                                    ttCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGtt                                                        <  4:325477/138‑1 (MQ=255)
                                                                      cAATAAAATACTGGTACTATAATAAATGTTTACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTtat                                                      <  2:256574/138‑1 (MQ=255)
                                                                        aTAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATaaa                                                   <  8:220510/139‑1 (MQ=255)
                                                                                cTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTAc                                           <  2:27162/139‑1 (MQ=255)
                                                                                   gTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTaa                                        >  4:358815/1‑139 (MQ=255)
                                                                                   gTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTa                                         <  2:59878/138‑1 (MQ=255)
                                                                                       tataATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCaa                                    <  6:91152/139‑1 (MQ=255)
                                                                                       tataATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCaa                                    <  1:185137/139‑1 (MQ=255)
                                                                                       tataATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCaa                                    <  6:340955/139‑1 (MQ=255)
                                                                                        ataataAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAAcc                                      >  6:105710/1‑136 (MQ=255)
                                                                                                   ataCAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         <  5:10403/90‑1 (MQ=255)
                                                                                                   ataCAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCAtt                                                                         >  6:10403/1‑90 (MQ=255)
                                                                                                   ataCAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGtac                         >  3:211615/1‑138 (MQ=255)
                                                                                                   ataCAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGtac                         >  1:190979/1‑138 (MQ=255)
                                                                                                   ataCAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGtac                         >  3:328252/1‑138 (MQ=255)
                                                                                                    taCAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGtacta                       >  1:363271/1‑139 (MQ=255)
                                                                                                    taCAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAAAAGTCAGtacta                       >  5:231754/1‑139 (MQ=255)
                                                                                                      cAGATTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGtactac                      <  6:241860/138‑1 (MQ=255)
                                                                                                         aTTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTactact                     <  2:269936/136‑1 (MQ=255)
                                                                                                         aTTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTactact                     >  1:269936/1‑136 (MQ=255)
                                                                                                         aTTGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGt                  >  2:54024/1‑139 (MQ=255)
                                                                                                          ttGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGtt                 <  4:334210/139‑1 (MQ=255)
                                                                                                           tGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGAt                                                                    >  2:285084/1‑87 (MQ=255)
                                                                                                           tGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGAt                                                                    <  1:285084/87‑1 (MQ=255)
                                                                                                           tGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               >  5:102162/1‑124 (MQ=255)
                                                                                                           tGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               <  6:102162/124‑1 (MQ=255)
                                                                                                           tGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGtt                 >  5:144737/1‑138 (MQ=255)
                                                                                                           tGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGtt                 >  5:303453/1‑138 (MQ=255)
                                                                                                           tGTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGtt                 >  2:162417/1‑138 (MQ=255)
                                                                                                            gTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCATTGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGttt                >  1:109341/1‑138 (MQ=255)
                                                                                                            gTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGAt                                                                    <  7:38561/86‑1 (MQ=255)
                                                                                                            gTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGAt                                                                    >  8:38561/1‑86 (MQ=255)
                                                                                                            gTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               >  3:169419/1‑123 (MQ=255)
                                                                                                            gTATGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               <  4:169419/123‑1 (MQ=255)
                                                                                                               tGGAGATGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTtaat             <  2:95754/138‑1 (MQ=255)
                                                                                                                 gagaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               <  8:329018/118‑1 (MQ=255)
                                                                                                                 gagaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               >  7:329018/1‑118 (MQ=255)
                                                                                                                 gagaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTtaataa           >  2:298236/1‑138 (MQ=255)
                                                                                                                  agaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTtaataa           >  6:96820/1‑137 (MQ=255)
                                                                                                                  agaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAAAAGTCAGTACTACTCGTTtaataa           >  7:259494/1‑137 (MQ=255)
                                                                                                                   gaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTTGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAg        >  1:352377/1‑139 (MQ=255)
                                                                                                                   gaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               <  4:44432/116‑1 (MQ=255)
                                                                                                                   gaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGt                               >  3:44432/1‑116 (MQ=255)
                                                                                                                   gaTGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAg        >  7:131270/1‑139 (MQ=255)
                                                                                                                     tGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCt      >  7:264065/1‑139 (MQ=255)
                                                                                                                     tGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCt      >  1:251719/1‑139 (MQ=255)
                                                                                                                     tGTAATTAATTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCt      >  7:246602/1‑139 (MQ=255)
                                                                                                                       taattaatTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTactact                     <  4:119303/122‑1 (MQ=255)
                                                                                                                       taattaatTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTactact                     >  3:119303/1‑122 (MQ=255)
                                                                                                                       taattaatTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCtt     <  7:202236/138‑1 (MQ=255)
                                                                                                                       taattaatTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCTTc    >  1:90068/1‑139 (MQ=255)
                                                                                                                       taattaatTAAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCTTc    >  5:341904/1‑139 (MQ=255)
                                                                                                                         attaattaAAAAGGAGTTTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCTTCTg  <  2:363271/139‑1 (MQ=255)
                                                                                                                                         |                                                                                                                          
TGAAAGTAATGATTTGTAGGATCAGTTAAGAAAGGTTTAAGATTAGATATTGAAAAATTTTATATATTTTCAATAAAATACTGGTACTATAATAAATGTATACAGATTGTATGGAGATGTAATTAATTAAAAAGGAG‑TTTTTAATTGCGTTGGAGTAAATGGTTCAATGTTTTTTGTATAGTAGCATTGGGATCAATATATGGTTATAAATTATTTACTAACCAAGAAGTCAGTACTACTCGTTTAATAATAGCTTCTG  >  BS168_reference_genome/557729‑557987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑