New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	pSIJ663_pHT315_araE_xy	= 5551	14 (0.000)	6619 (1.020)	193/222	NT	99.8%	intergenic (+820/–)	ampR/–	–/–
	?	pSIJ663_pHT315_araE_xy	9889 =	NA (NA)					intergenic (+5158/–)	ampR/–	–/–

ACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGT  >  pSIJ663_pHT315_araE_xy/9764‑9932                                                                                                                              |                                            gtgtgttaaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTgg                                >  6:221205‑M2/18‑139 (MQ=255)      tttaattataagTTACTTGAAATGATGTATTTTAAAATTAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGACATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcggc                            <  2:278777‑M2/126‑1 (MQ=255)       taaattatcagTGACATGAAAGTAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt                           <  6:231959‑M2/127‑1 (MQ=255)       taaattatcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCt                           <  1:109036‑M2/127‑1 (MQ=255)             atcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt                     <  3:267240‑M2/133‑1 (MQ=255)             atcagTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt                     <  3:271226‑M2/133‑1 (MQ=255)             aaGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGt                     <  4:309404/138‑1 (MQ=255)              tcagTTAAATGAATGGAAGTATTTTAAAATGATGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTa                    <  5:299359‑M2/134‑1 (MQ=255)                    aCATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTa              <  3:33639/138‑1 (MQ=255)                      aTGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGa           >  2:263552/1‑139 (MQ=255)                                gTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcggc                            >  3:10873/1‑112 (MQ=38)                                gTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTggcggc                            <  4:10873/112‑1 (MQ=38)                                gTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACCCGGCAGt  >  2:109505/1‑138 (MQ=37)                                   tttGAAAATGAAGTATACTCCATCTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcgg                                          <  8:238515/95‑1 (MQ=255)                                   tttGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTgcgg                                          >  7:238515/1‑95 (MQ=35)                                                                                                                              |                                            ACATTTAAAATGAAGTTTGACATGAAAGGAAGTATTTGAAAATGAAGAATACTCCAACTCAATTAGAACCAAATGTTCCTGTAACAAGAAGCCATTCAATGGGATTTGTCATTTTGATCTCATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGT  >  pSIJ663_pHT315_araE_xy/9764‑9932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.