| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,158 | (T)5→6 | coding (257/258 nt) | yjpA ← | putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,153 | 1 | . | T | 98.7% | 270.3 / NA | 78 | intergenic (+24/+4) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base T (35/41); minor base G (1/0); total (37/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.68e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGG‑‑C‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317020‑1317275 | tgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGG‑‑G‑tcttt > 3:63346/1‑139 (MQ=255)tgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGG‑‑G‑tcttt > 8:333261/1‑139 (MQ=255) cGGTCGGGTTCATCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATttcttc < 8:212276/138‑1 (MQ=255) gggTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTc < 8:10142/139‑1 (MQ=255) gTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCa < 1:368792/139‑1 (MQ=255) gTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCa < 8:342177/139‑1 (MQ=255) ttCAGCTTTACTCAGGTGATGGTTAATGCAGGTGAAACAGCAAACACAGAAGGGAAAAAAATTAATATTTCGGCCCGCAATCAAAAATTCTGCATAAAAAAATACCCTTAGGGGGG‑‑T‑TTTTTTTTTATTCAGCTTCCAt > 8:267057/1‑139 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATc < 8:183473/138‑1 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCg > 7:288805/1‑139 (MQ=255) cAGGTGATGGTTCATGCAGGGGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTc < 2:272070/139‑1 (MQ=255) aGGTGCTGGTTCATGCACGTGTAACATCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 4:358964/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 8:277842/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 1:22948/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 3:120013/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 8:22526/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 5:53182/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 4:252211/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTc < 4:171661/138‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 4:342315/1‑135 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 5:80304/1‑135 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 3:342315/135‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 7:6111/1‑139 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGTATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 2:333505/1‑137 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 2:22648/1‑137 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 8:288365/1‑137 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTc < 6:25587/138‑1 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag > 1:392898/1‑138 (MQ=255) tCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag > 4:217292/1‑135 (MQ=255) aTGCAGGTGAGACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 7:383249/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCCCGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCCGCTTCCATTCTTTTATCGTCAGCGCAGAAGATc > 3:48424/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGGTCAGAAGATc > 1:179783/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAATATc > 8:301699/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 5:28118/1‑139 (MQ=255) tGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATcc > 1:44160/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTTTTTCTTCAGCTTCCATTCTTTTTTAGTCAGCTCAGAAGATCCACTTg > 5:59495/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTATTCAGCTTCCATTATTTTAACGTCAGCTCAGAAGATCAACTTg > 7:351678/1‑139 (MQ=255) gAAACATCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 2:149887/139‑1 (MQ=255) aCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc < 4:63346/139‑1 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc > 1:143224/1‑126 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc < 2:143224/126‑1 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 7:126429/1‑138 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGAAACACTTGCCACCAGCGGATCCGCATGGccca > 2:339732/1‑137 (MQ=255) aCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt > 6:124620/1‑139 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg > 5:89836/1‑139 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg < 8:288805/138‑1 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg < 7:153180/138‑1 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 5:320939/139‑1 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 6:92284/139‑1 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 3:217292/139‑1 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 2:282668/1‑139 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 3:166849/1‑139 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCGTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 5:93179/1‑139 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc < 8:112690/92‑1 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc > 7:112690/1‑92 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCtttt > 3:372701/1‑67 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCtttt < 4:372701/67‑1 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAAt < 1:282668/139‑1 (MQ=255) aaCATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGc < 1:22648/139‑1 (MQ=255) cATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTTCCACCCGCGGATCCGCATGGCCGATTTACGCTGCCGCTTCCAGTGAATCTGCtt > 2:390060/1‑139 (MQ=255) cATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCtt < 6:217655/139‑1 (MQ=255) cATGATGCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCATCCAGTGAATCTGCtt < 2:86119/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 8:118610/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 8:383249/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 1:169949/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 4:2645/139‑1 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 5:353584/84‑1 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc > 6:353584/1‑84 (MQ=255) gatgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGGTTTCCGCTGCCTCTTCCAGTGACTCTGCTTCGa > 7:188967/1‑139 (MQ=255) atgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 6:28118/139‑1 (MQ=255) atgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 7:288365/139‑1 (MQ=255) tgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 6:159645/114‑1 (MQ=255) tgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc > 5:159645/1‑114 (MQ=255) tgCATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 4:120856/1‑138 (MQ=255) cATAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGa > 4:269132/1‑138 (MQ=255) aTAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 2:314485/139‑1 (MQ=255) tAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa > 4:266774/1‑138 (MQ=255) tAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCAACTTGCCACCAGCGTAACCGCATGGCCCATTTCCGCTGCCTCATCCAGTGAATCTTCTTCGATGACa > 6:7382/1‑138 (MQ=255) tAAAAAAAGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTATTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCGCTTCCAGTGCATCTGCTTCGATGACa > 6:46163/1‑138 (MQ=255) aaGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 7:301699/139‑1 (MQ=255) aaGACCCTTA‑‑‑GGGGTCTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 1:333505/139‑1 (MQ=255) | TGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑‑‑GGG‑‑C‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317020‑1317275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |