BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	pSIJ663_pHT315_araE_xy	= 5551	36 (0.010)	3345 (1.060)	192/240	0.0	99.0%	intergenic (+820/–)	ampR/–	–/–
*	?	pSIJ663_pHT315_araE_xy	9889 =	NA (NA)	3345 (1.060)	192/240	0.0	99.0%	intergenic (+5158/–)	ampR/–	–/–

Only 100 of 3539 total aligned reads displayed.

TATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  pSIJ663_pHT315_araE_xy/5410‑5551

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAGGAGTT  >  pSIJ663_pHT315_araE_xy/9889‑10026

  ttGTCCTGGCGGGGTTCGCCACCTCTGACTGGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATG                                                                                                                                             <  8:214261/137‑1

  TAGTCCTGTCGGGTTTCGCCACCTCTGACTTGATCGTCGATTTTTGTGATGCGCGTCTGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATG                                                                                                                                             <  7:327721/139‑1

  TAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCGCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATG                                                                                                                                             <  3:115825/139‑1

    GTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGAGTTTTTTGATGCAGGTCAGGGGGGGGGAGCCGATGGAAAAACGCCCGCAACGCGGGCGTTTTAAGGTTCATGGCCTTTTTCTGGCCTTTTGCTCACCTGTG                                                                                                                                           >  4:202897/1‑139

       gTGTCGGGTTGCGCCACCTCTGACTTGAGCGGCGATTTTTGTGATGCTGGTGAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGG                                                                                                                                        <  3:190029/138‑1

       cggtgGGGTTGCGCCACCTCTGACTTGAGCGTCGTTTTTTGGGAGCGTCGGCTGGGGGGCGGAGCCTAAGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGG                                                                                                                                        <  1:383511/134‑1

       CTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGG                                                                                                                                        >  4:274258/1‑139

        TGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGC                                                                                                                                       >  1:101557/1‑139

        TGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGC                                                                                                                                       >  2:295347/1‑139

        TGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCGATGGAAAAACGCCAGCCACGCGGCCGTTTTACGGTTCCTGGCCTTTTGCTGGCCGTTTGCTAACATGTGCGGC                                                                                                                                       >  6:98184/1‑139

         GTCGGGGTTCGCCCCCTCTCACTTGCGCGGCGATTTTTGGGCTGCGCGTCAGGGGGGCGGAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCG                                                                                                                                      <  5:128959/139‑1

          TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTGGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGGCGTTTTACGGTTCCTGGGCTTTTGCTGGCCTTTTGCTCACAGGTGCGGCGG                                                                                                                                     >  6:407877/1‑139

          TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  1:51311/1‑139

          TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  8:271392/1‑139

          TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  8:359285/1‑139

          TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGG                                                                                                                                     >  5:378576/1‑139

          TCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGC                                                                                                                                       <  1:250514/137‑1

               TTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCGTTTGCTCACATGTGCGGCGGGGCTT                                                                                                                                >  7:48993/1‑139

                 TCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTT‑CTCACATGTGCGGCGGGGCTTGGC                                                                                                                             >  3:141981/1‑139

                 TCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCGCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCGTGG                                                                                                                              >  3:310692/1‑139

                 TCGCCACCTCTGACTTGAGCGGCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTG                                                                                                                               <  6:70631/138‑1

                  CGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTTGCCTTTTGCTCACATGTGCGGCGGGGCTTGG                                                                                                                              <  6:175667/138‑1

                  CGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTTCTCACATGGGCGGCGGGGCTTGG                                                                                                                              <  5:88810/138‑1

                   GCCACCTCTGAGTTGAGCGTCGATTTTTGTGATGCTCGTCTGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCG                                                                                                                            <  4:310231/139‑1

                   GCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGC                                                                                                                             <  8:244078/138‑1

                      ACCTCTGTCTTGAGCGGCGATTTTTGGTATGCTCGGCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  2:123446/139‑1

                      ACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGGCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  5:324378/139‑1

                      ACCTCTGACTTGAGCGGCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  7:146917/139‑1

                      ACCTCTGACTGGCGCGTCGATTTTTGTGATGCTCGTGAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  5:251376/139‑1

                      ACCTCTGAATTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGTAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         <  7:274297/139‑1

                        CTCTGCCTTGAGCGTCGATTTTTGGGAGGCGCGTCAGGGGGGCGGAGCCTAGGGAAAAACGCCAGCAACGCGGCCGTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCGTGGCGGCTTA                                                                                                                       <  8:105925/139‑1

                        CTCTGAGTGGAGCGGCGTTTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTA                                                                                                                       <  8:186269/139‑1

                        CTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCGACGCGGCCTTTTTACGGTTCCTGGCCGTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGATTA                                                                                                                       >  5:154953/1‑139

                             tCTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAAAGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGGCTTTTGCTCACAAGTGCGGCGGGGCTTGGCGGCTTATTGTA                                                                                                                  >  1:19213/2‑139

                             ACTTGCGCTGCGATTTTTGTGATGCTCGGCAGGGGGGGGGAGCCTTTGGAAAAACGCCAGCAACGCGGCCTTTTTACGGGTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTA                                                                                                                  <  1:122674/139‑1

                             ACTTGCGCGTCGATTTTTGTGCTGCTCGGCCGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTA                                                                                                                  <  3:5808/139‑1

                                  AGCGTCGATTTTTGTGATGCTCGTCATGGGGGCGGAGCCAATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTAACAAGTTCGGCGGGGCTTGGCCGCTTATTGTAAGGC                                                                                                              >  4:342069/1‑138

                                  AGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGTAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGC                                                                                                                          <  6:288223/126‑1

                                  AGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCT                                                                                                             >  5:283915/1‑139

                                   ggGTCGTTTTTTGTGATGCTCGTCAGGGTGGCGGAGCCTATGGAAAAACGCCAGCCACGCGGCCTTTTTACGGGTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTA                                                                                                            <  6:221074/137‑1

                                   GCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTA                                                                                                            <  4:372543/139‑1

                                   GCGGCGATTTTTGTGATGCGCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTA                                                                                                            <  3:394067/139‑1

                                   GCGGCGATTTTTGTGATGCGCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTA                                                                                                            <  5:224254/139‑1

                                       CGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   >  1:77950/1‑128

                                       CGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATG                                                                                                                                             <  5:62068/102‑1

                                        GATTTTTGTGATGCTCGTAAGGGGGGCGGAGCATATGGAAATACTCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACA                                                                                                       <  5:199580/139‑1

                                              tgggcgGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCA                                                                                                  <  6:194645/132‑1

                                              TGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCA                                                                                                  <  3:165396/138‑1

                                                               GGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATC                                                                                >  6:248379/1‑139

                                                                  CGGAGCCTATGGAAAAACGCCAGCAACGCTGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTTTGGCTATGACACTGCAGTGATTTCTGGCGCCAGCGGT                                                                             >  6:380624/1‑139

                                                                  CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGT                                                                             >  8:29865/1‑139

                                                                  CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGT                                                                             >  2:388695/1‑139

                                                                  CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGT                                                                             >  7:387143/1‑139

                                                                  CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGT                                                                             <  4:152066/139‑1

                                                                  CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCT                                                                                                                         >  4:126840/1‑95

                                                                  CGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGG                                                                                                                                        <  2:165485/80‑1

                                                                          ATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTA                                                                                                                  <  3:284048/94‑1

                                                                           tgtAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  1:157197/134‑1

                                                                           tgcAAACACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  4:43742/134‑1

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  8:39188/137‑1

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  7:225874/137‑1

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  7:200559/137‑1

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  8:64915/137‑1

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      >  3:364753/1‑137

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      <  1:348963/137‑1

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      >  2:232751/1‑137

                                                                           TGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCGTATTGTATGGCTATGACACGGCAGTGCTTTCTGGCGCCATCGGTTTTCTGA                                                                      >  1:99048/1‑137

                                                                                 AACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTA                                                              >  4:235150/1‑139

                                                                                   CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  6:147440/139‑1

                                                                                   CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  7:71163/139‑1

                                                                                   CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTGTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  4:177276/139‑1

                                                                                     CCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGGTTTCTGAAAGATTTATA                                                            >  5:109805/1‑137

                                                                                       AGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGC                                                        <  7:119484/139‑1

                                                                                         CAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCT                                                      <  8:324785/139‑1

                                                                                           ACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGA                                                    <  5:177771/139‑1

                                                                                            CGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAG                                                   <  8:128797/139‑1

                                                                                            CGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAG                                                   <  2:259912/139‑1

                                                                                              aGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCAAATGTGCGGCGGGGCTTGGCGGCTTAATGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGATTTCTGAAAGATTTATACAGCCTGAGTC                                                 >  2:89445/2‑139

                                                                                              CGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAG                                                   >  6:117673/1‑137

                                                                                              CGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCG                                                                                                                                      <  3:248856/54‑1

                                                                                                         CGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCGTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGA                                       <  5:303008/138‑1

                                                                                                           GTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGG                                     >  7:176244/1‑138

                                                                                                              CCTGGCCTTTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   >  5:404592/1‑57

                                                                                                                  GCCTTTTGCTTGCCTTTTGCTCACATGTGCGGAGGGGCTTGGCGGCTTATTGTATGTCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGT                              <  7:361959/138‑1

                                                                                                                      TTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCGGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGG                                     >  3:334520/1‑127

                                                                                                                      TTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTT                         >  5:350852/1‑139

                                                                                                                      TTTGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGT                                                                                                                   >  3:90168/1‑49

                                                                                                                        TGCTGGCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCTGTTATCGAGGGAATTGTCATTTC                        >  6:34822/1‑138

                                                                                                                             GCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTTTGACACGGCAGTGAGTTCTGGCGCCATCGGTTATCTGAAAGATTTATACAGCCTGAGTCCGTGTAGGGAGGGCCTTGTCATTTGAAGCAT                  >  8:163265/1‑139

                                                                                                                             GCCTTTTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      >  4:84816/1‑87

                                                                                                                                  TTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCA                       <  2:33882/129‑1

                                                                                                                                  TTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTAAAGCATTATGA             >  1:318793/1‑139

                                                                                                                                  TTGCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATA                                                            <  3:214035/92‑1

                                                                                                                                    GCTCACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGAT            <  2:20123/138‑1

                                                                                                                                        ACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAG       <  7:302071/139‑1

                                                                                                                                        ACATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTATGGCGCCATCGGTTGTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGTAATTGTCATTTCAAGCATTATGATTGGAG       <  2:61172/139‑1

                                                                                                                                         ctTGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGA                                                                      >  6:312564/3‑75

                                                                                                                                          ATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGCCACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGGTTAGGGAGGGACTGGTCATTACAAGAATTATGATTGGAGGA     >  7:24947/1‑139

                                                                                                                                          ATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAG       >  1:280910/1‑137

                                                                                                                                          ATGTGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATAC                                                           <  1:221231/85‑1

TATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  pSIJ663_pHT315_araE_xy/5410‑5551

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgtGCGGCGGGGCTTGGCGGCTTATTGTATGGCTATGACACGGCAGTGATTTCTGGCGCCATCGGTTTTCTGAAAGATTTATACAGCCTGAGTCCGTTTATGGAGGGACTTGTCATTTCAAGCATTATGATTGGAGGAGTT  >  pSIJ663_pHT315_araE_xy/9889‑10026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.