| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 961,032:1 | +A | 100% | intergenic (‑46/‑362) | katA ← / → ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 961,032 | 1 | . | A | 100.0% | 39.8 / NA | 13 | intergenic (‑46/‑362) | katA/ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (4/9); total (4/9) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGTCCGCGAGAACCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGT‑AAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGACACTTAATAATTTTTGGAGAAATAA > BS168_reference_genome/960904‑961161 | ggTCCGCGAGAACCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGT‑aaaaaagtc > 8:150934/1‑134 (MQ=255) gCAGTCATTGAGTTTTGATTATCCCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAat < 7:72235/139‑1 (MQ=255) ttATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTAt < 6:83328/138‑1 (MQ=255) aCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt < 7:150934/139‑1 (MQ=255) aCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt < 7:73961/139‑1 (MQ=255) ccGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATc < 1:146076/139‑1 (MQ=255) aGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt < 1:214562/134‑1 (MQ=255) aGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt > 2:214562/1‑134 (MQ=255) ttGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt > 1:114193/1‑120 (MQ=255) ttGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt < 2:114193/120‑1 (MQ=255) aTCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAg < 5:102375/138‑1 (MQ=255) tataAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGaca > 7:96372/1‑134 (MQ=255) tataAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGaca < 8:96372/134‑1 (MQ=255) tctcTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGAAATATAGTATCGAAATTGTTCAAAAACCTTGTTGTAACAGCTTTTTATGACACTTAATAATTTTTGGAGAaataa > 5:115796/1‑139 (MQ=255) | GGTCCGCGAGAACCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGT‑AAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGACACTTAATAATTTTTGGAGAAATAA > BS168_reference_genome/960904‑961161 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |