| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,158 | (T)5→6 | coding (257/258 nt) | yjpA ← | putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,153 | 1 | . | T | 96.6% | 302.5 / 2.9 | 89 | intergenic (+24/+4) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base T (55/31); total (56/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
CTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑G‑‑C‑T‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317025‑1317275 | cTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑G‑‑G‑T‑Cttttttat < 6:154938/139‑3 (MQ=255)cTCGTTGCGGTCGGGGTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGCAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑G‑‑G‑t‑gttttt > 1:41738/1‑134 (MQ=255) gCGGTCGGGGTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑G‑‑G‑T‑Cttttttatttc < 1:230118/136‑6 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATttcttc < 7:233202/138‑1 (MQ=255) gTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCtt < 1:84623/136‑1 (MQ=255) ttCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTTCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCAt > 3:178155/1‑139 (MQ=255) gCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCtt < 7:137527/139‑1 (MQ=255) cTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACAATTCAAATTTCGGCACGCAATCAAACATGAAGCATAAAAAAAGACCCTTACGG‑‑GT‑CTT‑TTTTATTTCTTCACCTTCCATTc > 1:268530/1‑136 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTAt > 5:94990/1‑139 (MQ=255) catgTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCATTA‑GG‑‑GGTCTT‑TTTTATTTATTCAGCTTCCATTATTTTATc > 1:370244/4‑136 (MQ=255) cAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATc > 1:206124/1‑136 (MQ=255) cAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATc > 2:291655/1‑136 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTAt < 2:15693/134‑1 (MQ=255) gagATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGACAGc > 7:5005/3‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 8:209749/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACAAGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 6:298129/1‑139 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCtttt > 6:380658/1‑127 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCtttt < 5:380658/127‑1 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 4:225611/1‑137 (MQ=255) tGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag < 8:394469/139‑1 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCAGGCAATCAAACATGATGCATAAAAAAATACCCTAA‑GGCTA‑‑C‑TATTTTATTTCTTCATCTTCCATACTTTTATCGTCAGATctc > 6:176485/1‑136 (MQ=255) gTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACAATTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCaga < 8:263605/138‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTc > 8:257784/1‑111 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTc < 7:257784/111‑1 (MQ=255) cAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc < 6:94990/139‑1 (MQ=255) aGGTGAAACAGCAAACACAGTAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAATAAAGTCCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTGTGCTCAGTAGATCCACt < 6:218528/139‑1 (MQ=255) gagAAACAGCAAACACAGAAGGGAAAACATTTCATATAGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTGTTCAGCTTCCATTCTTTTATCGTCAGATCAGAAGATCCACTTg > 4:97581/3‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 4:142423/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 5:184111/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 4:59794/1‑139 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACtt < 1:46609/135‑1 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 2:243766/1‑136 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 1:32328/1‑136 (MQ=255) aCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccac > 6:382105/1‑138 (MQ=255) cAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 3:61848/1‑139 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 4:122073/1‑138 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 5:111913/1‑138 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGAATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGATTACATTCTTTTATCGTCAGCTCAGAAGATCCACATGCCACCAGCg > 7:232815/1‑138 (MQ=255) gAAGGGAAAAGATTTCATATTGCGGCACGCAATCAAACATGATGAATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa < 4:5511/139‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTGTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa > 7:278863/1‑139 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCCGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa > 4:207114/1‑139 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa > 8:5108/1‑139 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa > 4:251918/1‑139 (MQ=255) aGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATg > 5:263066/1‑139 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCGATTCTTTTATCGTCAGCTCATAACAACCACTTGCAACCAGCGGATCCGCCTTGCCGa > 4:151123/1‑139 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACAAGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGa < 5:298129/139‑1 (MQ=255) aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTc > 3:371892/1‑139 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCCGCGGATCCGCATGGCCGATTTCCg > 7:239166/1‑139 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTcc < 2:206124/135‑1 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGAACCACTTGCCACCAGCGGCTCCGCATGGCCGagtgacg > 1:171947/1‑130 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCCTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 7:382590/139‑1 (MQ=255) atTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGcc > 3:1526/1‑139 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc > 7:225658/1‑139 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc > 8:16249/1‑139 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc > 8:10184/1‑139 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 4:403943/1‑139 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTAAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 8:258079/1‑139 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 8:157678/138‑1 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTACGCTGCctcgt > 7:157678/1‑137 (MQ=255) aCGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTc < 2:32328/136‑1 (MQ=255) aCGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 6:184111/139‑1 (MQ=255) aCGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 4:371892/139‑1 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGt > 6:211433/1‑139 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGt > 3:364436/1‑139 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAAt < 8:406662/139‑1 (MQ=255) cATGATGCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGACGATTTCCGCTGCCTCTTCCAGTGAATCTg < 2:268530/136‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 7:195979/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 6:331855/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 4:178155/139‑1 (MQ=255) gatgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCCGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCCGCGGATCCGCATGGCCGCTTTCCGCTGCCGCTGCCAGTGAATCTGCTTCGa > 7:357963/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 8:247638/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCGTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 3:287593/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTAATTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 3:131226/1‑139 (MQ=255) tgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGATTCTGGTTCGATg > 3:255153/1‑139 (MQ=255) tgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 6:38663/1‑138 (MQ=255) tgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 3:225611/138‑1 (MQ=255) tgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg > 5:393776/1‑139 (MQ=255) tgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCGCTTCCAGTGATTGTGCTTCGAt > 4:128695/1‑138 (MQ=255) tgCATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTATTTTATCGTCAGCTCAGAAGATCCACTTGCCACAAGCGGATCCGCATGGCCGAGTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt > 5:174096/1‑138 (MQ=255) cATAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGa > 5:93611/1‑138 (MQ=255) aTAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 4:1526/139‑1 (MQ=255) aTAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 8:239166/139‑1 (MQ=255) aTAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 7:258079/139‑1 (MQ=255) tAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 6:296953/132‑1 (MQ=255) tAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg > 5:296953/1‑132 (MQ=255) tAAAAAAAGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa > 3:376937/1‑138 (MQ=255) aaaaaGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACg > 8:272265/1‑139 (MQ=255) aaaaGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGc < 4:307840/139‑1 (MQ=255) aaaGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGAGCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATAc > 1:66694/1‑136 (MQ=255) aaGACCCTTA‑GG‑‑GGTCTT‑TTTTATTTCATCAGCTTCCAGTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCGCTTCCAGTGAATCGGCTGCGATGACATACGCTc < 4:159820/139‑1 (MQ=255) | CTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTA‑GG‑‑G‑‑C‑T‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317025‑1317275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |