| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | 2410998 = | 72 (0.780) | 48 (0.540) | 24/244 | 1.8 | 57.7% | intergenic (‑409/‑88) | fmnP/serA | FMN permease/3‑phosphoglycerate dehydrogenase |
| ? | BS168_reference_genome | 3486762 = | 0 (0.000) | intergenic (+4/+45) | araR/yvbT | transcriptional repressor of the ara regulon (LacI family)/putative alkanal monooxygenase | |||||
CATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC > BS168_reference_genome/3486704‑3486896 | tgtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCaaa < 4:94885‑M2/81‑1 (MQ=255) gtcactgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaac > 3:170084‑M2/58‑139 (MQ=255) gacagtaatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaac < 1:202177‑M2/82‑1 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa > 7:233331‑M2/55‑139 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa > 5:1506‑M2/55‑139 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa < 7:360363‑M2/85‑1 (MQ=255) actgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGATTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacgaa > 5:247437‑M2/55‑139 (MQ=255) tgataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaacga < 1:279002‑M2/84‑1 (MQ=255) ataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCa < 5:47530‑M2/89‑1 (MQ=255) ataatttaacacactttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCa < 8:233331‑M2/89‑1 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACa < 6:202702‑M2/27‑1 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACa > 5:202702‑M2/37‑63 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCAtt > 3:168755‑M2/37‑127 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCAtt < 4:168755‑M2/91‑1 (MQ=255) tttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCgtgt > 3:59514‑M2/37‑139 (MQ=255) ttcaaaagagtgtcaacgtgtatttacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATTTCTGTTATCTGTTTTTCAAAACGTCAGCGATGATTTCAAACGAAagcattctgtcctgtc > 2:202177‑M2/36‑131 (MQ=255) ttcaaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGtt > 5:238086‑M2/36‑139 (MQ=255) caaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCgtgt > 1:400248‑M2/34‑136 (MQ=255) caaaagagtgtcaacgtgtattcacgcagaaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCttgt > 1:91982‑M2/34‑136 (MQ=255) aaaagagtgtcatcgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGAAGATTTCAAACGAACGCATTCTGTCTGCGTGtt < 2:215684‑M2/104‑1 (MQ=255) aaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaac > 2:70666‑M2/33‑114 (MQ=255) aaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAaac < 1:70666‑M2/82‑1 (MQ=255) aaaagagtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCaa < 4:354277‑M2/107‑1 (MQ=255) gtgtctacgtgtattgacgcagtaaaAAGCAATGTATGGGGCTCCCCGTTACATTTCTTTTTTTATAGCTGTTATCTGATTTTCCAAACGTCAGCGATGATTTCAAACGAACGAATTCTGTCTGCGTGTTCAAAGGttt < 8:210320‑M2/113‑1 (MQ=255) gtgtcaccgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt > 5:325643‑M2/27‑139 (MQ=255) gtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt > 7:393028‑M2/27‑139 (MQ=255) gtgtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt > 7:23754‑M2/27‑139 (MQ=255) gtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt < 8:156822‑M2/113‑1 (MQ=255) gtcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt > 7:156822‑M2/25‑137 (MQ=255) tcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGttt > 1:4469‑M2/24‑136 (MQ=255) tcaacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGtt > 2:257587‑M2/24‑135 (MQ=255) aacgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGAGGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTGTCt > 1:373391‑M2/22‑136 (MQ=255) cgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGa < 1:257587‑M2/117‑1 (MQ=255) cgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGtt < 6:228926‑M2/120‑1 (MQ=255) cgtgtattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGtt < 5:71146‑M2/120‑1 (MQ=255) cgtgtattgacgcactaaaAAGCAATGTCTGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGtt < 5:43737‑M2/120‑1 (MQ=255) tattgacgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAAc > 6:328612‑M2/16‑138 (MQ=255) actcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCa < 2:122288‑M2/125‑1 (MQ=255) acgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATaa < 8:341266‑M2/128‑1 (MQ=255) acgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGATATCTGTTTTTCAAAACGTCAGCGATGATTTCATACGAACGCATTCTGTCTGCGTGTTCAAAGGTTACTGAGTTAACCa > 2:318963‑M2/11‑135 (MQ=255) cgcagtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGGGTTCAAAGGTTTCAGAGTTAACCATAAtt > 3:26253‑M2/10‑139 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCTAACGTCTGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGt > 3:339652‑M2/6‑139 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCa > 7:346427‑M2/6‑94 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCa < 8:346427‑M2/89‑1 (MQ=255) gtaaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGt > 7:46146‑M2/6‑139 (MQ=255) taaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTc < 6:199137‑M2/135‑1 (MQ=255) taaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTc < 4:299411‑M2/135‑1 (MQ=255) taaaAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTc < 8:46146‑M2/135‑1 (MQ=255) | CATATTTGAGCCTGAGTTGATCATTCGCCAGTCCGCACGAAAACTGAATGAATAAAAAAAGCAATGTATGGGTCTCCCCGCTACATTGCTTTTTTTATAGCTGTTATCTGTTTTTCCAAACGTCAGCGATGATTTCAAACGAACGCATTCTGTCTGCGTGTTCAAAGGTTTCTGAGTTAACCATAATTTCGTC > BS168_reference_genome/3486704‑3486896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |