| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 3,564,023 | T→A | 5.1% | N500I (AAC→ATC) | psdB ← | lantibiotic ABC transporter (permease) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 3,564,023 | 0 | T | A | 5.1% | 302.6 / 3.3 | 93 | N500I (AAC→ATC) | psdB | lantibiotic ABC transporter (permease) |
| Reads supporting (aligned to +/- strand): ref base T (40/48); new base A (2/3); total (42/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCATGCTTCCTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCTTTTCGCTGACAACCAATAAACGGCTG > BS168_reference_genome/3563885‑3564160 | aGCATGCTTCCTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGt > 1:72880/1‑139 (MQ=255) gCATGCTTCCTTGCACGATAAAAAACAGCACGCTGACAAACAGACGAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGtt > 2:86186/1‑139 (MQ=255) cATGCTTCCTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGttt > 5:177293/1‑139 (MQ=255) cATGCTTCCTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGttt > 7:143562/1‑139 (MQ=255) tgcttgctTGGACGATTAAAAACAGCCCGCTGCCAAACAGACCAATAAACATCATTAATTCAACACCCTGCTTAACAATTTTATAAATAGGAGCACGTGTTTTAAAATAAGATTTATGTTGTTTGGGCACCAATGttt > 2:245257/1‑138 (MQ=255) tGCTTCCTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGtttt > 2:179351/1‑138 (MQ=255) ccTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAg < 1:347190/137‑1 (MQ=255) ccTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAg < 8:240402/137‑1 (MQ=255) cTTGCACGATAAAAAACAGCACGCTGACACACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCt < 8:400690/138‑1 (MQ=255) cTTGCACGATAAAAAACAGCACGCTGACAATCAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCt < 2:123249/138‑1 (MQ=255) cTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCtt > 4:172500/1‑139 (MQ=255) cACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCa < 4:314686/139‑1 (MQ=255) tAAAAAACAGCACGCTGACAAAGAGAACAATAAACATCATTAATGCAACTCACTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAgaga < 1:259714/138‑1 (MQ=255) tAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAgaga > 7:136820/1‑138 (MQ=255) aCAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCAc < 3:119920/139‑1 (MQ=255) aCAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCAc < 2:422874/139‑1 (MQ=255) aCAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCAc < 3:172500/139‑1 (MQ=255) cAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCAcc < 1:94987/139‑1 (MQ=255) cACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCa < 2:37277/124‑1 (MQ=255) cACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCa > 1:37277/1‑124 (MQ=255) cACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGtc > 7:296984/1‑139 (MQ=255) tGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCa > 1:245639/1‑119 (MQ=255) tGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCa < 2:245639/119‑1 (MQ=255) aCAAACAGACAAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGcc < 1:86186/139‑1 (MQ=255) gACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTc < 7:157777/139‑1 (MQ=255) gACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTc < 3:224468/139‑1 (MQ=255) aCCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTc > 3:219414/1‑138 (MQ=255) aCCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTc > 3:84341/1‑138 (MQ=255) aCCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTc > 3:90189/1‑138 (MQ=255) aCCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCa < 5:86274/139‑1 (MQ=255) aTAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCt > 4:271407/1‑139 (MQ=255) tAAACATCATTAATGCAACTGACTGCTTGACAATTTGATAACTAGGAGCACGTGTTTGATAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTc < 2:316531/139‑1 (MQ=255) aCAGCATTAATGCATCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATa < 3:423598/139‑1 (MQ=255) aCAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATa < 5:16167/139‑1 (MQ=255) aGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCa < 8:377863/99‑1 (MQ=255) aGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCa > 7:377863/1‑99 (MQ=255) aGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCa > 7:229751/1‑122 (MQ=255) aGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCa < 8:229751/122‑1 (MQ=255) aGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAAc > 6:272557/1‑139 (MQ=255) aGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAAc > 4:9640/1‑139 (MQ=255) aGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAAc > 2:394910/1‑139 (MQ=255) cATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCTGAGACATCCACCGTCTCCTGCCAATGCTAAAGCTCATCAcc > 6:145876/1‑138 (MQ=255) cATTAATGCAACTCCCTGCTCCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAAcc > 5:307683/1‑138 (MQ=255) aTTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTa < 4:120166/139‑1 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTa < 7:76872/130‑1 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTa > 8:76872/1‑130 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATtctc > 6:415443/1‑138 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATtct > 6:25897/1‑137 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCa > 2:203559/1‑139 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCa > 2:109056/1‑139 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCa > 3:270632/1‑139 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCa < 1:179351/139‑1 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGATTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATa > 1:361388/1‑125 (MQ=255) aCTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGATTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATa < 2:361388/125‑1 (MQ=255) ccTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCt < 5:25897/138‑1 (MQ=255) tGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGtt > 8:260320/1‑139 (MQ=255) cacaATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCtt > 7:98105/1‑138 (MQ=255) acaATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCa < 6:200793/139‑1 (MQ=255) acaATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCa < 6:177293/139‑1 (MQ=255) gttGATAACTAGGAGCACGTGTTTGAAAATCAGCTGCATGTTCTTTCGGCACC‑ATGTTTGCAAGCTTTTCAGAGACATCCAGCGTCTCCTGACAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCgg < 1:167871/138‑1 (MQ=255) gATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGca < 8:42031/138‑1 (MQ=255) gATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGca < 8:98105/138‑1 (MQ=255) gATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGca < 2:235559/138‑1 (MQ=255) gATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGca < 5:128633/138‑1 (MQ=255) gATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGca < 1:245257/138‑1 (MQ=255) gATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGca < 4:131638/138‑1 (MQ=255) aTAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGcaca < 5:415443/139‑1 (MQ=255) aTAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGcaca < 7:260320/139‑1 (MQ=255) aCTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATc < 8:136820/138‑1 (MQ=255) aCTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGATTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATc < 2:178688/138‑1 (MQ=255) cTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCt > 8:79505/1‑139 (MQ=255) gAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATACCCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCtgtg > 2:63368/1‑138 (MQ=255) gCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACa < 3:163474/139‑1 (MQ=255) cACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGa > 4:316701/1‑136 (MQ=255) cGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGAc > 6:417645/1‑139 (MQ=255) tgtTTGAAATTCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCGCCGTCTCCTGCCAATGCTCAAGCTCa > 1:18503/1‑88 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAg > 8:337600/1‑45 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAg < 7:337600/45‑1 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCCCCGTCTCCTGCCAATGCTCAAGCTCa < 2:18503/88‑1 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCACGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGa > 4:361752/1‑136 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATACCCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTg > 1:189256/1‑139 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCtt < 3:375914/114‑1 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCtt > 4:375914/1‑114 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGa < 3:361752/136‑1 (MQ=255) tgtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTg > 1:276062/1‑139 (MQ=255) gtTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGt < 4:270632/139‑1 (MQ=255) tGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGa < 4:151176/132‑1 (MQ=255) tGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGa > 3:151176/1‑132 (MQ=255) cAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATACCCTCCCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCGCtt > 4:74389/1‑139 (MQ=255) aGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCttt < 4:84341/139‑1 (MQ=255) aGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCttt < 4:90189/139‑1 (MQ=255) tatgtTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCTTTTCGCt < 4:46433/139‑1 (MQ=255) ttCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCTTTTCGCTGAc < 3:271407/138‑1 (MQ=255) tttCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCTTTTCGCTGACAAc > 8:416985/1‑138 (MQ=255) tttCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCTTTTCGCTGACAAc > 4:24691/1‑138 (MQ=255) tttCGGCACC‑ATGATTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCa < 2:114953/64‑1 (MQ=255) tttCGGCACC‑ATGATTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCa > 1:114953/1‑64 (MQ=255) cGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCTCATCCTGTGACAGCCTGTCAAAGCTCTTTTCGCTGccaaccaa > 6:183494/1‑138 (MQ=255) gCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCAAATGCTCACGCTCATAACCTCCCATTATCATCTGTTCATTCAGCGGCACATACTGTGACAGACTTTCAAAGCTCTTTTCGCTGACACCAAATa > 4:102460/1‑138 (MQ=255) ttttCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCTTTTCGCTGACAACCAATAAACGGCTg < 5:417645/138‑1 (MQ=255) | AGCATGCTTCCTTGCACGATAAAAAACAGCACGCTGACAAACAGACCAATAAACAGCATTAATGCAACTCCCTGCTTCACAATTTGATAACTAGGAGCACGTGTTTGAAAATCAGATGTATGTTCTTTCGGCACC‑ATGTTTTCAAGCTTTTCAGAGACATCCACCGTCTCCTGCCAATGCTCAAGCTCATAACCTACCATTCTCATCTGTTCCTTCAGCGGCACATCCTGTGACAGACTGTCAAAGCTCTTTTCGCTGACAACCAATAAACGGCTG > BS168_reference_genome/3563885‑3564160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |