| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 1,544,043 | C→T | 100% | F76F (TTC→TTT) | ylaB → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,544,043 | 0 | C | T | 95.2% | 194.5 / 1.6 | 62 | F76F (TTC→TTT) | ylaB | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (1/2); new base T (25/34); total (26/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.25e-01 | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AACAGCATGAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTCATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGAAACAG > BS168_reference_genome/1543907‑1544178 | aaCAGCATGAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTAt > 3:19959/1‑139 (MQ=255) gttGATTCCCTTTTTCAAAAGAATGCGTAAGACTTAAAGAGTAAATCTTGTTTAAAGAGAAGTCCCGGTGCTGTAGTAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGttttatttta < 5:99945/136‑1 (MQ=255) caagAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAACTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGACTTCCATCTATATCTGTTTTAATTTAt > 6:99945/4‑139 (MQ=255) cATGAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTtttattttat > 4:284645/1‑139 (MQ=255) cATGAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTtttattttat > 4:407071/1‑139 (MQ=255) cATGAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTtttattttat > 1:8515/1‑139 (MQ=255) cATGAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCAATGTATATCTGTtttattttat > 6:328920/1‑139 (MQ=255) aaTCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATAGCTGTTTTATTTTATTgg < 1:181078/138‑1 (MQ=255) ccTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCAtt > 8:78678/1‑139 (MQ=255) tCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGAt < 3:278323/138‑1 (MQ=255) aGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGgt < 6:299594/139‑1 (MQ=255) tGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTgg > 6:30559/1‑139 (MQ=255) tagtcTTATAGATTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATAGCTGTCTTCCATGTATATCTGTTTTTTTTTATTGGCCATTTGGATGACGGTGTGGt‑ttt < 6:300058/134‑1 (MQ=255) aaGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAAt < 6:97876/139‑1 (MQ=255) aaGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAAt < 7:302635/139‑1 (MQ=255) agagTAAAACTTGTTTAAAGAGAACTCCCGGTTCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATg < 8:42259/139‑1 (MQ=255) tAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAg > 6:399878/1‑138 (MQ=255) tAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAg > 6:357410/1‑138 (MQ=255) aaaaCTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCa < 5:68168/139‑1 (MQ=255) aaaCTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCa > 1:261526/1‑138 (MQ=255) aaaCTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTCATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCAt < 5:4981/139‑1 (MQ=255) aCTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAg < 2:203915/139‑1 (MQ=255) tGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa > 3:427554/1‑139 (MQ=255) gTTTTAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa < 7:90053/138‑1 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCAt < 1:359033/133‑1 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCAt > 2:359033/1‑133 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAggg < 4:427554/137‑1 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa < 4:148477/138‑1 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa < 2:162666/138‑1 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa < 7:95924/138‑1 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGAt > 3:148477/1‑139 (MQ=255) gTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTCATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa < 8:147053/138‑1 (MQ=255) ttAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGAtt < 6:328689/138‑1 (MQ=255) aaGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCa < 4:12150/138‑1 (MQ=255) gagaAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTg < 3:407071/139‑1 (MQ=255) gaAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAg < 8:346025/139‑1 (MQ=255) aaGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAgg > 4:269572/1‑139 (MQ=255) aGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGa < 2:261526/139‑1 (MQ=255) gTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTAt < 4:19959/139‑1 (MQ=255) gatGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCg < 5:66576/137‑1 (MQ=255) cTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATTGGGATTCCATTGAGGACTTGTATCgg < 2:126524/139‑1 (MQ=255) cTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCgg < 5:357410/139‑1 (MQ=255) gaaAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTTATTAAGCATAGGGATTCCAATGATGACTTGTATAGGCAGtatta > 6:66576/1‑139 (MQ=255) aGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGa > 4:225674/1‑96 (MQ=255) aGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGa < 3:225674/96‑1 (MQ=255) ccAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCaa > 4:422046/1‑138 (MQ=255) atGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAatta > 7:68628/1‑139 (MQ=255) tGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAattat < 7:78678/139‑1 (MQ=255) tGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAattat < 3:269572/139‑1 (MQ=255) tGAAAGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAattat < 4:397516/139‑1 (MQ=255) aaGTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAAttattta < 5:30559/139‑1 (MQ=255) gTATACCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATtatttatt < 2:8515/139‑1 (MQ=255) tataCCTGTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATtatttatt > 7:219012/1‑138 (MQ=255) gTCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATTAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGa > 6:415979/1‑139 (MQ=255) tCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATg < 6:164804/65‑1 (MQ=255) tCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATg > 5:164804/1‑65 (MQ=255) tCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa > 5:99561/1‑76 (MQ=255) tCTTCCATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGa < 6:99561/76‑1 (MQ=255) ccATGTATATCTTTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTTATGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACtca < 5:399878/138‑1 (MQ=255) ccATGTATATCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTTTCAAGAAATTTTAAATTATTTATTCAGAATGACtcat > 8:279407/1‑139 (MQ=255) atatCTGTTTTATTTTATTGGCGATTTGGATGCCGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCtt > 6:214200/1‑139 (MQ=255) atCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTg < 7:210112/72‑1 (MQ=255) atCTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTg > 8:210112/1‑72 (MQ=255) cTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGTGTTAATTTTTAAT‑AAGCATTGTGGTTGCAATGCGGAATGTGATCGGCAGTAATAAAAAGAAATATTAAATTTTTTATTCACAAGGGCTCATAATCTTGat > 2:202000/1‑137 (MQ=255) cTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTTaa > 4:256902/1‑138 (MQ=255) cTGTTTTATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGaaa > 4:220870/1‑139 (MQ=255) ttttattttaTTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGTGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGaaa < 3:6108/136‑1 (MQ=255) ttttattttaTTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGaaa < 5:415979/136‑1 (MQ=255) ttttattttaTTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGaaa < 3:422046/136‑1 (MQ=255) ttttattttaTTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGAAACAg > 7:418138/1‑139 (MQ=255) ttttattttaTTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGAAACAg > 8:396353/1‑139 (MQ=255) ttttattttaTTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGAAACAg > 1:400212/1‑139 (MQ=255) ttttattttaTTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGAAACAg > 4:120802/1‑139 (MQ=255) ttttattttaTTGCCCATTTGGATGACGTTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGATGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGaaa < 5:328920/136‑1 (MQ=255) tttCATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCTTAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGAAACAg > 5:287810/1‑139 (MQ=255) | AACAGCATGAATCCCTATTTCAAAAGAATGCGGAAGACTTAAAGAGTAAAACTTGTTTAAAGAGAAGTCCCGGTGCTGAAGAAGAAAGCCAAATCAGATATATGAAAGTATACCTGTCTTCCATGTATATCTGTTTCATTTTATTGGCCATTTGGATGACGGTGTGGT‑TTTATTTTTAATGAAGCATAGGGATTCCATTGAGGACTTGTATCGGCAGTATTATCAAGAAATTTTAAATTATTTATTCAGAAGGACTCATCATCTTGAAACAG > BS168_reference_genome/1543907‑1544178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |