| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 961,032:1 | +A | 100% | intergenic (‑46/‑362) | katA ← / → ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 961,032 | 1 | . | A | 100.0% | 55.6 / NA | 18 | intergenic (‑46/‑362) | katA/ssuB | vegetative catalase 1/aliphatic sulfonate ABC transporter (ATP‑binding protein) |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (7/11); total (7/11) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GTTGGTCCGCGAGAACCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGT‑AAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGACACTTAATAATTTTTGGAGAAATAAT > BS168_reference_genome/960901‑961162 | gTTGGTCCGCGAGAACCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGT‑aaaaaag < 2:91027/139‑3 (MQ=255) gTCCGCGAGAACCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCaa > 4:109125/1‑139 (MQ=255) aCCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTta > 7:166308/1‑139 (MQ=255) gCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAat < 3:109125/139‑1 (MQ=255) aGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAatta < 7:126099/139‑1 (MQ=255) ttGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATtata < 3:234768/139‑1 (MQ=255) aaCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTaa < 8:166308/139‑1 (MQ=255) aaCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTaa < 4:39334/139‑1 (MQ=255) aaCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTaa < 5:256166/139‑1 (MQ=255) aCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTaa > 7:81338/1‑138 (MQ=255) aCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt < 3:149053/139‑1 (MQ=255) aCCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAAt < 5:139472/139‑1 (MQ=255) gcgcCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGata > 8:111714/1‑138 (MQ=255) gAACTAATGTTATAAACTCTTGGAATTTATAAGAAAATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGaaatagat < 8:81338/138‑6 (MQ=255) tGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAATTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTa > 6:5937/1‑138 (MQ=255) tCACCTCTTTGAATTTATAAGAACATAATATGATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCt < 1:239208/139‑1 (MQ=255) tGGAATTTATAAGAACATAATATCATCTCTAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGa > 6:247105/1‑139 (MQ=255) ctctAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGACACTTAATAATTTTTGGAGAaataat > 2:3127/1‑139 (MQ=255) tAAGTAAAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGACACTTAATAATTTTTGGAGAaataat < 5:74730/136‑1 (MQ=255) | GTTGGTCCGCGAGAACCGGCAGTCATTGAGTTTTGATTATCTCCAACCGGAGCGCCCCAGCTAGTTGTCAGTTTATTTGAACTCATGTTATCACCTCTTGGAATTTATAAGAACATAATATCATCTCTAAGT‑AAAAAGTCAATATTATTTTATAATTATTATAAAATAGTTATCTCTATTAATCGATATATAGTATCGAAATTGTTGAAAAACCTTGTTGTAACAGCTTTTTATGACACTTAATAATTTTTGGAGAAATAAT > BS168_reference_genome/960901‑961162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |