| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,158 | (T)5→6 | coding (257/258 nt) | yjpA ← | putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,153 | 1 | . | T | 93.9% | 310.6 / 12.4 | 100 | intergenic (+24/+4) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (5/1); new base T (50/43); total (56/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑C‑T‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317027‑1317275 | cGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑G‑T‑Cttttttattt > 5:114086/1‑135 (MQ=255) tGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑G‑T‑Cttttttatttct > 6:501780/1‑132 (MQ=255) tGCGGTCGGGTTCAGCTTTACTAAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑G‑T‑Cttttttatttat > 8:329628/1‑132 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAATGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATttcttc < 2:209549/138‑1 (MQ=255) cGGTAGGGTTCAGCTTTACTCAGGAGATGGTTCATGCAGGGGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATttcttc < 4:465121/138‑1 (MQ=255) tCGGGGTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCt < 7:420345/139‑1 (MQ=255) ggtCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCa < 6:393449/137‑1 (MQ=255) gctCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGA‑CTT‑TTTTATTTCTTCAGCTTCCa < 1:182595/137‑1 (MQ=255) gTTCAGCGTTACTCAGGTGATGGTTCATGCAGATGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCa < 4:316281/139‑1 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTa > 8:401221/1‑138 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATc > 8:549481/1‑139 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATAATGCGGCACGCAATCAAACATGATGCATAAAAAAAGACACTTAGGGGT‑CTT‑TTTTATTTATTAATCTTCAATTGTTTTATc > 3:205522/1‑139 (MQ=255) ctaaGGTGATGGTTCATCCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑C‑TGTTTTATTTCTTCAGCTTCCATTCTTTTATCg > 5:474740/4‑139 (MQ=255) cTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACACTTAGGGGT‑CTT‑TTTTATTTATTCAGCTTCCATTATTTTATCg > 6:338090/1‑139 (MQ=255) aGGTGATGGTTCATGCATGTGAAACAGCAAACACAGAAGGGAAAACATATCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCATCTTCCATTCTTTTATCGt < 6:70432/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACTCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 7:462596/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 1:344904/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 6:101320/1‑137 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 8:394263/137‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 3:503470/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATGCTTTTATCGTCCGc > 6:568990/1‑139 (MQ=255) tGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 5:251260/1‑136 (MQ=255) ggTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCag > 6:483749/1‑138 (MQ=255) tCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCCGCTTCCATTCTTTTATCGTCAGCTCag > 2:64448/1‑135 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 3:297992/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 8:521981/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 3:219856/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 2:216246/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 3:14300/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 7:562778/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGCGAAAACATATCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc < 7:272102/139‑1 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 5:211444/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 8:417992/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 2:6851/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 6:419512/1‑139 (MQ=255) tGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑C‑TGTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGc > 7:349468/1‑139 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 7:401221/138‑1 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGATGATAATATCCCCTTGcaa > 3:349492/1‑137 (MQ=255) aaaCAGCAAACACAGAAGGGAAAACATATCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 2:46232/138‑1 (MQ=255) aCAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGccacc > 4:561162/1‑139 (MQ=255) aGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg < 7:69728/139‑1 (MQ=255) cAAACATAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACt > 8:411326/1‑128 (MQ=255) cAAACATAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACt < 7:411326/128‑1 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCgg < 5:101320/139‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa < 1:194815/139‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa < 2:143530/139‑1 (MQ=255) aGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATg > 2:475597/1‑139 (MQ=255) aaaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCg > 4:356459/1‑131 (MQ=255) aaaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCg < 3:356459/131‑1 (MQ=255) aaaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGcc > 3:261494/1‑138 (MQ=255) aaaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCg > 5:99835/1‑139 (MQ=255) aaaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTAAGAAGATCCACTTGCCACCAGCGGAGCCGCATGGcc > 8:562444/1‑138 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGa > 7:247103/1‑139 (MQ=255) aCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAtt > 8:488472/1‑139 (MQ=255) aCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCATTAGGGGT‑CTT‑TTTTATTTCTTCAGATTCCAATCTTTTATCGTAAGCTCAGAAGATCCACATGCCACCAGCGGATCCTCATGGACGagt > 6:229035/1‑137 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg > 3:577864/1‑139 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CGT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg > 5:47883/1‑139 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCCCTTGCCACCCGCGGATCCGCATGGCCGATTTCCGc > 5:33326/1‑139 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAGGGCCGATTTCCGCt > 5:456034/1‑139 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 5:419512/138‑1 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 2:270645/138‑1 (MQ=255) ataaTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGGCCGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 4:98075/138‑1 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 6:114086/139‑1 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCaga < 4:228962/91‑1 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCaga > 3:228962/1‑91 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc > 5:546766/1‑139 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 2:423083/1‑139 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt > 3:219641/1‑139 (MQ=255) aCGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 4:297992/139‑1 (MQ=255) aCGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAg < 6:546766/139‑1 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGt > 6:354067/1‑139 (MQ=255) aaTCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCTCATGGCCGATTTCCGCTGCCTCTTCCAGTGat > 8:357015/1‑138 (MQ=255) aTCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAAt < 7:301194/139‑1 (MQ=255) atgatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTc > 3:385071/1‑139 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 1:364320/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 6:201894/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 8:247103/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 6:211444/139‑1 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGCTCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 3:144435/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGCTCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCGCTTCCAGTGAAGCTGCTTCGa > 7:209188/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 5:107645/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCATTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCCGATCCGCATGGCCGATTTCCGCTGCCTCTGCCAGTGAATCTGGTTCGa > 2:299882/1‑139 (MQ=255) atgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 1:8618/139‑1 (MQ=255) atgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 2:142473/139‑1 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCCCTTGCCACCAGCGGATCCGCATGGCCGAGTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg > 1:39685/1‑139 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTTCCACCAGCGGATCCGCATGGCCGATTTACCCTGCCTCTTACAGTGAATCTGCTTCGAt > 2:488895/1‑138 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCTAATTCCGCTGCCTGTTCCAGTCAATCTGCTTCGAt > 6:11224/1‑138 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATg > 3:434892/1‑139 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTATTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 3:400318/138‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGTAT‑T‑TTTTATTTCTTGAGCTTGCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGACGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 4:349492/139‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 5:354067/139‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 4:219856/139‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 7:521981/139‑1 (MQ=255) tAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGCTCCGCATGGCCGATTTCCGCTGc > 8:119004/1‑110 (MQ=255) tAAAAAAAGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 7:119004/110‑1 (MQ=255) aaaaaaGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATAc < 1:488895/139‑1 (MQ=255) aaaaaGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACg < 5:483749/139‑1 (MQ=255) aaaGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCt < 2:169287/139‑1 (MQ=255) aaaGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGATTCCATTCTTTTATCGTCATCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAGGGCCGATTTCCGCTGACTCTTCCAGTGAATCTGCTTCGATTACATACGCt < 8:120344/139‑1 (MQ=255) aaGACCCTTAGGGGT‑CTT‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTc < 6:81279/139‑1 (MQ=255) | CGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑C‑T‑TTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317027‑1317275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |