| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 3,770,066 | (A)8→9 | intergenic (‑258/+38) | ywzF ← / ← csbD | conserved protein of unknown function/stress response protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 3,770,058 | 1 | . | A | 95.4% | 497.0 / 14.9 | 152 | intergenic (‑250/+46) | ywzF/csbD | conserved protein of unknown function/stress response protein |
| Reads supporting (aligned to +/- strand): ref base . (5/2); new base A (84/61); total (89/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 155 total aligned reads displayed.
GTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑G‑‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTG > BS168_reference_genome/3769926‑3770190 | gTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑G‑‑a‑aa‑aa > 1:325469/1‑138 (MQ=255) aaaTTTTAAAACTTATGTCATCATTATATATAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑G‑‑a‑aa‑aaaaaagac < 6:263329/139‑5 (MQ=255) ttACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATAAGAAAAAG‑CTA‑‑A‑AA‑AAAAAGACAAGa > 7:564898/1‑138 (MQ=255) ttACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAAGATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑G‑‑ATAA‑AAAAAGACAAGa > 1:92492/1‑138 (MQ=255) tACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGaaa > 1:195034/1‑139 (MQ=255) aCAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGaaa < 3:18303/138‑1 (MQ=255) tcatcaTTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGttt < 2:330215/138‑1 (MQ=255) tcatTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTg > 3:38756/1‑139 (MQ=255) atTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGc < 6:248803/138‑1 (MQ=255) ttATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCct < 3:12235/139‑1 (MQ=255) atataGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCctc < 7:244470/138‑1 (MQ=255) ataGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTc > 2:110689/1‑139 (MQ=255) gaagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg < 5:232768/138‑1 (MQ=255) gaagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg < 4:507742/138‑1 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCAGATCAGAAAAAT‑C‑G‑‑A‑AATAAAAAGACTAGAAACATTTCGTTTCCTGCCTGTTCCGTa > 8:278939/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGc > 8:330236/1‑129 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg < 5:83201/137‑1 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg > 4:218802/1‑137 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg < 3:218802/137‑1 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa > 2:328121/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa > 1:411236/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa > 8:454539/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa > 3:179891/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa > 7:11483/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa > 5:120969/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCGCTTCCGTa > 8:355498/1‑139 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTAATCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa < 8:184250/139‑1 (MQ=255) agagGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTAc > 2:450235/1‑139 (MQ=255) agGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGa > 8:402214/1‑139 (MQ=255) agGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGa > 4:410564/1‑139 (MQ=255) agGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTGGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑A‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTCCGa > 6:58421/1‑139 (MQ=255) ggCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt < 8:391204/139‑1 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAACCATTTCGTTTCCTGCCTCTTCCGTACGAt > 8:242152/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGc > 2:85319/1‑124 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGc < 1:85319/124‑1 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGag > 5:191849/1‑137 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 5:290840/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 1:230914/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 5:160741/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 7:519205/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 4:541932/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 5:130175/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 2:300226/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt < 4:102906/138‑1 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 3:108128/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCATGCCTCTTCCGTACGAt > 2:35972/1‑138 (MQ=255) gCCTATTAATTCAAAGAATATTAAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAt > 3:485426/1‑138 (MQ=255) ttAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCt > 5:398498/1‑139 (MQ=255) ttAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCt > 8:487045/1‑139 (MQ=255) ttCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTAt > 7:193234/1‑139 (MQ=255) tCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATc > 8:253186/1‑139 (MQ=255) tCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATc > 1:198213/1‑139 (MQ=255) tCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCGTCTTTTTTTGTTATTTTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATc > 2:338329/1‑139 (MQ=255) aaaGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTg < 4:179891/139‑1 (MQ=255) ataataaaaaacTTTACTTACCTTGACCAAATCAGCTTCTTTTATTGTAAAATTTAATCACCTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACAATTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAt < 4:29465/133‑1 (MQ=255) tatTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAtt < 1:450235/139‑1 (MQ=255) atTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAttt > 5:326373/1‑139 (MQ=255) atTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAtt > 1:139110/1‑138 (MQ=255) atTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑G‑‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTa > 8:462420/1‑139 (MQ=255) aaaaaTTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCt < 6:380217/139‑1 (MQ=255) tttAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCt < 8:519205/139‑1 (MQ=255) cTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGata < 4:4360/139‑1 (MQ=255) cTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGata < 1:328121/139‑1 (MQ=255) ccAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCtt < 3:410564/139‑1 (MQ=255) aTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGata > 2:574748/1‑130 (MQ=255) aTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGata > 2:148705/1‑130 (MQ=255) aTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGata < 1:574748/130‑1 (MQ=255) aTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGata < 1:148705/130‑1 (MQ=255) aTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTg > 3:489182/1‑138 (MQ=255) gCTTCTTTTTTTGTTATATTTATTGACATCAGAAAAAGCC‑A‑‑A‑AA‑AAAAAGACTAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGAttt < 7:278939/139‑1 (MQ=255) gCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGAttt < 4:485426/139‑1 (MQ=255) gCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑G‑‑ACAA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGAGTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGAttt < 1:35972/139‑1 (MQ=255) cttcttTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg > 7:211744/1‑80 (MQ=255) cttcttTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg < 8:211744/80‑1 (MQ=255) cttcttTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTc > 5:158914/1‑139 (MQ=255) cttcttTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTc > 3:266021/1‑139 (MQ=255) tttttGTTATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCtt < 7:402214/138‑1 (MQ=255) ttttGTTATATTTATTCCCATCAGAAAAAG‑C‑GAAA‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCtt < 7:24790/138‑1 (MQ=255) ttATATTTATTCACATCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCtt < 5:556818/139‑1 (MQ=255) aataacaTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACCAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCtttt < 5:447936/134‑1 (MQ=255) ttaacaTCACAATAAG‑C‑GA‑A‑AA‑AAAAAGAAAAGTAACATTTAGTTTACTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTTCCTTATCttttt < 4:380482/135‑1 (MQ=255) acaTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGcc < 6:160741/139‑1 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAt > 6:6015/1‑78 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAt < 5:6015/78‑1 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGAttt < 1:215600/112‑1 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGAttt > 2:207812/1‑112 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCtt > 8:541390/1‑118 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCtt < 7:541390/118‑1 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCGtt > 7:141399/1‑139 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCtt > 8:128417/1‑139 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCtt < 2:411236/139‑1 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCtt < 2:230914/139‑1 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCtt > 6:164635/1‑139 (MQ=255) aTCAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCt > 2:98832/1‑138 (MQ=255) cAGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACCTTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCa < 2:238712/139‑1 (MQ=255) aGAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCa < 2:43521/138‑1 (MQ=255) gAAAAAG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGc < 4:266021/139‑1 (MQ=255) aaaaaG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGcc > 3:434371/1‑139 (MQ=255) aaaaaG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGcc < 7:454539/139‑1 (MQ=255) aaaG‑C‑GA‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTg < 2:410005/139‑1 (MQ=255) | GTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAG‑C‑G‑‑A‑AA‑AAAAAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTG > BS168_reference_genome/3769926‑3770190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |