| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 4,155,395 | (A)5→6 | intergenic (‑186/+38) | trnY‑Lys ← / ← purA | tRNA‑Lys/adenylosuccinate synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 4,155,390 | 1 | . | A | 97.1% | 618.6 / 7.8 | 171 | intergenic (‑181/+43) | trnY‑Lys/purA | tRNA‑Lys/adenylosuccinate synthetase |
| Reads supporting (aligned to +/- strand): ref base . (0/5); new base A (66/100); total (66/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 194 total aligned reads displayed.
GTTCTCATCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAAC‑A‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAGCT > BS168_reference_genome/4155253‑4155521 | gTTCTCATCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGCTTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGAACAACTTATATTCTGCTTTc‑aaac > 7:209805/1‑138 (MQ=255)gTTCTCATCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTATCAGACCACCTTATATGCGGCTTTc‑aaac > 7:569749/1‑138 (MQ=255) aTCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaa > 4:478993/1‑137 (MQ=255) cTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaacaa < 5:255309/139‑5 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaacaag < 2:159836/137‑6 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaacaa < 6:325099/136‑5 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaacaa < 6:264290/136‑5 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaacaa < 7:253154/136‑5 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaacaa < 3:77493/136‑5 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGcc > 6:269379/1‑139 (MQ=255) tACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGcc < 3:168119/138‑1 (MQ=255) aCTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGccc < 4:293844/138‑1 (MQ=255) ctctATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCt > 2:21529/1‑139 (MQ=255) tATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCtt > 8:201255/1‑138 (MQ=255) aTTGAAGCAGTTTCCGTAACAACGAGATTAATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTaaa > 1:175891/1‑139 (MQ=255) ttGAAGCAGTTTCCGTAACAAAGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATTCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTaaa > 8:402564/1‑138 (MQ=255) gAAGCAGTTTCCGTAACAACGAGATTAATAATATCACGAACAAATAGAAGGGGCAATAACTTTTTTGG‑GTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTCAAAAA‑A‑AAAA‑CAAGCCCCTTAAATa < 1:539151/138‑1 (MQ=255) aaGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGcccc < 5:225527/130‑1 (MQ=255) aaGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAgg > 1:81170/1‑139 (MQ=255) gCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTAATATTTTTTTATAAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAACCCCGTAAATAgtgg > 2:116399/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCtt > 3:215606/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCtt > 8:85835/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCtt > 6:73141/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCtt > 2:139423/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCtt > 8:426898/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCtt > 8:561883/1‑139 (MQ=255) tttCCGAAAAAACGAGATTTATAATATCACTAACAAATAGAAGTGGCAATAAATTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTg < 6:49648/139‑1 (MQ=255) ttCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGTGGCTTg > 7:54953/1‑138 (MQ=255) ttCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGATTg > 7:344903/1‑138 (MQ=255) ccGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCa < 3:183283/138‑1 (MQ=255) gTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGAc < 7:426898/139‑1 (MQ=255) gTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGAc < 4:382867/139‑1 (MQ=255) gTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGAc < 1:157306/139‑1 (MQ=255) aacaacGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACat < 2:307874/139‑1 (MQ=255) acaacGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑a‑aaaaacaa > 3:372588/1‑107 (MQ=255) caacGATATTTATAATATCACCAAAAAAATTAAGTGGAATTAACTTTTTGGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACatat < 1:116399/139‑1 (MQ=255) caacGAGATTTATAAAATCACGAACAAATTGAAGTGGAAATAAGTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCTGTCCAACTTATTTGCTGCTTTC‑AATC‑ATAAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACatat < 3:233381/139‑1 (MQ=255) aacGAGATTTATAATATCACGAACAACTAGAAGTGGCAATAACTTTTTTGG‑TTTTTTATCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATAtt < 6:213487/139‑1 (MQ=255) aacGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATAtt < 5:549877/139‑1 (MQ=255) aacGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATAtt > 6:305107/1‑139 (MQ=255) aacGAGATTTATAATATAACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATAtt < 2:51865/139‑1 (MQ=255) ataataTCACGAACAAATAGACGTGGCAATAAATTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTAATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGt < 2:62947/138‑1 (MQ=255) ataataTCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAgggg > 5:273843/1‑115 (MQ=255) ataataTCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGt < 6:95269/138‑1 (MQ=255) atatCACTAACAATTCTAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTCAAAAA‑A‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:222281/139‑1 (MQ=255) atatCACGAACAAATCGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCACTTAAATAGTGGCTTGCAGACATATTCTATTTAGTTCGc < 7:401991/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 2:29264/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 2:81170/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 5:468137/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 8:371497/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 8:325823/139‑1 (MQ=255) atatCACGAACAAATACAAGGGGCAATAACTTTTTTGG‑TTTTATTTCATACTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATCGGGGCTTGCAGACATATTCTATTTAGTTCGc < 8:48637/139‑1 (MQ=255) tataACGAACAAATAGAACTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCa < 6:459970/139‑1 (MQ=255) tatCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCa < 1:88209/139‑1 (MQ=255) tatCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCa < 7:23583/139‑1 (MQ=255) ctcccGAAAAAATAGAAGTGGAAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCAc < 2:550730/135‑1 (MQ=255) atCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCAc < 8:513006/139‑1 (MQ=255) tCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCAc < 4:362946/138‑1 (MQ=255) tCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCAc < 7:199504/138‑1 (MQ=255) tCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACg < 1:32183/139‑1 (MQ=255) cACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGc < 4:204206/94‑1 (MQ=255) cACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGc > 3:204206/1‑94 (MQ=255) cACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTAAGACCAACTTATATTCGGCTTTC‑AAACAA‑AAAA‑CAACCCCCTTAAATAGGGGCTTGAAGACATATTCTATTTAGTTCGCACgg > 2:231665/1‑139 (MQ=255) cGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:520743/133‑1 (MQ=255) cGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc > 3:520743/1‑133 (MQ=255) cGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc > 1:358863/1‑133 (MQ=255) cGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTa > 1:194929/1‑139 (MQ=255) gAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTATCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTac < 7:502873/139‑1 (MQ=255) aaCAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTaca > 6:61017/1‑139 (MQ=255) gTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAg > 1:109033/1‑138 (MQ=255) tGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGAc < 6:405178/101‑1 (MQ=255) tGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGAc > 5:405178/1‑101 (MQ=255) gCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCg < 5:211269/116‑1 (MQ=255) gCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCg > 6:211269/1‑116 (MQ=255) gCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACa > 3:553158/1‑139 (MQ=255) cTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACAtttgttt < 2:410837/139‑1 (MQ=255) ttGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATTGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGa < 2:175891/138‑1 (MQ=255) ttGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGa < 3:438813/138‑1 (MQ=255) ttGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGa < 5:78866/138‑1 (MQ=255) tGG‑TTTTTTTTCTTATTTTTTTCTCAGACAAACTTATATGCTGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTTTTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAg < 2:13970/138‑1 (MQ=255) tGG‑TTTTTTTTCATATTTTTTTCTCAGACCATCTTATATGCGGCTTTC‑AAACAA‑AAAA‑CACGCCCCTTAAATAGGGGATTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGGGAAGGACATTTGTTTGTGAg < 1:33457/138‑1 (MQ=255) tGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCTGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAg < 2:382353/138‑1 (MQ=255) tGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAg < 1:139423/138‑1 (MQ=255) tGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAg < 4:174724/138‑1 (MQ=255) tGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACAATGCGAAGGACATTTGTTTGTGAg < 1:482326/138‑1 (MQ=255) aCTTATTTGCGGCTTAC‑AAAC‑A‑AAAACCAAGCCCCTTAAATTGGGGCTTGCAGACATATTCTATTTAGATCGCACGGTACACACTGCGTAGGTCATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCgg < 1:231665/139‑1 (MQ=255) tataTGCGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGaa < 7:467605/138‑1 (MQ=255) cGGCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGt < 7:93489/139‑1 (MQ=255) ggCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTc < 8:164649/139‑1 (MQ=255) gCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGt < 8:145993/58‑1 (MQ=255) gCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGt > 7:145993/1‑58 (MQ=255) gCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCAc > 5:414982/1‑64 (MQ=255) gCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCAc < 6:414982/64‑1 (MQ=255) gCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCg > 6:113273/1‑77 (MQ=255) gCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCg < 5:113273/77‑1 (MQ=255) gCTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGt > 5:298091/1‑137 (MQ=255) cTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGaa < 6:292577/122‑1 (MQ=255) cTTTC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAg > 3:469852/1‑139 (MQ=255) tC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAGCt > 1:265326/1‑138 (MQ=255) tC‑AAACAA‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAGCt > 2:497255/1‑138 (MQ=255) | GTTCTCATCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGG‑TTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAAC‑A‑AAAA‑CAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAGCT > BS168_reference_genome/4155253‑4155521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |