| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 3,770,058:1 | +A | 100% | intergenic (‑250/+46) | ywzF ← / ← csbD | conserved protein of unknown function/stress response protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 3,770,058 | 1 | . | A | 96.1% | 651.8 / 14.8 | 181 | intergenic (‑250/+46) | ywzF/csbD | conserved protein of unknown function/stress response protein |
| Reads supporting (aligned to +/- strand): ref base . (3/4); new base A (57/117); total (60/121) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
Only 100 of 204 total aligned reads displayed.
GATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑AAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTC > BS168_reference_genome/3769910‑3770201 | gATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑a < 2:303595/150‑1 (MQ=255) ttcttcAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑aaaa > 1:4906573/1‑150 (MQ=255) cttcAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑aaaaaa < 1:3124058/150‑1 (MQ=255) cttcAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGA‑G‑aaaaaa > 1:1925878/1‑150 (MQ=255) ttcAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTTAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑aaaaaa‑a < 2:519058/150‑1 (MQ=255) aaaTGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑aaaaaa‑aaag > 2:4944952/1‑148 (MQ=255) aaTGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑aaaaaa‑aaaga > 2:4558367/1‑147 (MQ=255) aaTGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑aaaaaa‑aaaga > 1:3723752/1‑147 (MQ=255) atgatgTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑aaaaaa‑aaagac < 2:2633661/150‑5 (MQ=255) gatgTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACaa < 1:1523744/150‑1 (MQ=255) gatgTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACaa > 1:4945583/1‑150 (MQ=255) atgTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAg > 2:1796619/1‑150 (MQ=255) atgTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAAAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAg < 1:622225/150‑1 (MQ=255) tgTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGa > 1:4212987/1‑150 (MQ=255) ataAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACa < 1:758165/150‑1 (MQ=255) ataAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACa < 1:4856853/150‑1 (MQ=255) aaaaGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACAtt < 1:3831145/150‑1 (MQ=255) aaGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTc < 2:1012020/150‑1 (MQ=255) aaGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTc < 2:4900471/150‑1 (MQ=255) aCAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTcc < 2:2078640/150‑1 (MQ=255) cAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCt > 1:3022047/1‑150 (MQ=255) aaCTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTg < 1:2498479/150‑1 (MQ=255) aCTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGc < 2:4839688/150‑1 (MQ=255) cTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGcc < 1:4309030/150‑1 (MQ=255) cTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGcc > 1:26566/1‑150 (MQ=255) ttATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCct < 1:4804753/150‑1 (MQ=255) aTGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAACTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCTTTTCCTGGctct > 1:4792856/1‑150 (MQ=255) tcatcaTTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTcc < 1:3924451/150‑1 (MQ=255) catcatTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCg < 2:284752/150‑1 (MQ=255) tcatTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTa < 2:2349326/150‑1 (MQ=255) catTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGTCTCTTCCGTAc < 1:2400885/150‑1 (MQ=255) catTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGttc < 1:2011998/150‑3 (MQ=255) atTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACg < 1:10474/150‑1 (MQ=255) tataGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTa < 1:2777442/150‑1 (MQ=255) agaagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATc < 1:400612/150‑1 (MQ=255) gaagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCt > 2:4630490/1‑150 (MQ=255) aagaGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCtt < 2:1176970/150‑1 (MQ=255) agagGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCttt > 1:4137167/1‑150 (MQ=255) agGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTAt < 2:703895/150‑1 (MQ=255) ggCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATc < 2:3280237/150‑1 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCt < 1:1796619/150‑1 (MQ=255) gCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCt > 1:511633/1‑150 (MQ=255) tATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGaa > 1:1157479/1‑150 (MQ=255) aTTAATTCAAAGAATATTTAAAAAATTTAATTACCTTTTCCAAATCAGCTTTTTTTTTTCTTATATTTATTCACATCAGAAAAAGCAA‑AAAAAA‑AAAACAAGAAACAATTCCTTTCCTGACTCTTACGTTCGATTGATCTTTATCTTaaa > 1:845078/1‑150 (MQ=255) ttAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCAGaaaa < 2:3054910/150‑1 (MQ=255) ttAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑AAAAAAGAAGACAAGAAACATTTCGTTTCCTGCCCCTTCCGTACGATTAATCTTTATCTGaaaa < 1:634340/150‑1 (MQ=255) aaTTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAtt < 1:2245713/150‑1 (MQ=255) aTTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAAttt < 2:1660962/150‑1 (MQ=255) ttCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTa < 1:2926120/150‑1 (MQ=255) ttCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTa < 1:2170036/150‑1 (MQ=255) cAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATc < 1:897065/150‑1 (MQ=255) aGAATATTTAAAAAACTTAGTTACCTTGATCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCtt < 1:3943101/150‑1 (MQ=255) aaTATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTgg > 1:3373738/1‑150 (MQ=255) aaTATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTgg < 2:4163379/150‑1 (MQ=255) tatTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCt > 2:4136682/1‑150 (MQ=255) tatTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCt < 1:980428/150‑1 (MQ=255) ttAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTc < 2:3163996/150‑1 (MQ=255) ttAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑AAAAAAGAAGACAAGTATCATTTCGTTTCCTGACTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCttac < 2:4515967/150‑3 (MQ=255) aaaaTTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGa < 1:2976624/150‑1 (MQ=255) aaaTTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGat > 1:2213979/1‑150 (MQ=255) tttAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATc < 2:3981305/150‑1 (MQ=255) tttAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATc < 2:3522504/150‑1 (MQ=255) tAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCt > 1:14338/1‑150 (MQ=255) tAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCt < 2:2662067/150‑1 (MQ=255) aGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCtt > 1:1002196/1‑150 (MQ=255) gTTACCTTGGCCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCTGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCttt > 2:35685/1‑150 (MQ=255) tACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTg > 1:18354/1‑150 (MQ=255) aCCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTTCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATGCTTTTgg > 1:1771498/1‑150 (MQ=255) aCCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTTATCTTTATCTCAAAATTTATCCTTGGCTTTCCCGATATCCTTTTgg < 1:4944947/150‑1 (MQ=255) aCCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTgg < 1:4558367/150‑1 (MQ=255) ccTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGa > 1:3777376/1‑150 (MQ=255) aCCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCg < 2:3870090/150‑1 (MQ=255) cAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGcc < 2:1376253/150‑1 (MQ=255) cAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGcc > 1:4698980/1‑150 (MQ=255) aaaTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCt < 2:840150/150‑1 (MQ=255) aaaTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCt < 2:1961607/150‑1 (MQ=255) aaaTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGCTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCAGTACTCTTTTGGATTTCGCCt > 1:3586906/1‑150 (MQ=255) aaTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCtt < 2:4906573/150‑1 (MQ=255) aaTCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCCCCtt > 2:4086935/1‑150 (MQ=255) tCAGCTTTTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCtttt < 1:3609528/150‑1 (MQ=255) cAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCATTTTg > 1:3564081/1‑150 (MQ=255) tcttTTTTTGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTa > 1:1584009/1‑150 (MQ=255) ttttttGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCt < 2:3735109/150‑1 (MQ=255) tttttGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCtt < 2:4180912/150‑1 (MQ=255) tttttGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCtt > 1:667218/1‑150 (MQ=255) ttGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCttttt < 1:4136669/150‑1 (MQ=255) tGTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCtttttt < 2:1903050/150‑1 (MQ=255) gTTATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTg > 1:498924/1‑150 (MQ=255) ttATATTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGc > 1:1241371/1‑150 (MQ=255) tataTTTATTCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGcc < 2:1455795/150‑1 (MQ=255) atttattCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATTCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTc < 2:4684300/150‑1 (MQ=255) ttattCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGACTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAg < 2:2720015/150‑1 (MQ=255) attCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGcc < 2:1304515/150‑1 (MQ=255) attCACATCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCAATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGcc > 1:4120326/1‑150 (MQ=255) cacaTCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTctgcctgc > 2:3369710/1‑150 (MQ=255) acaTCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCa > 1:271026/1‑150 (MQ=255) caTCAGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCAt < 2:1588426/150‑1 (MQ=255) aGAAAAAGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTcc < 2:4122569/150‑1 (MQ=255) aaaGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTc < 2:4792856/150‑1 (MQ=255) aaaGC‑GAAAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTc < 1:1534363/150‑1 (MQ=255) | GATTTCTTCAAATGATGTTATAAAAGTTTACAACTTATGTCATCATTATATAGAAGAGGCCTATTAATTCAAAGAATATTTAAAAAATTTAGTTACCTTGACCAAATCAGCTTCTTTTTTTGTTATATTTATTCACATCAGAAAAAGC‑G‑AAAAAA‑AAGACAAGAAACATTTCGTTTCCTGCCTCTTCCGTACGATTAATCTTTATCTGAAAATTTATCCTTGGCTTTCCCGATATCCTTTTGGATTTCGCCTTTTGCCTTATCTTTTTTGCCTTCAGCCTGCATGTCCGTTC > BS168_reference_genome/3769910‑3770201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |