| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,153:1 | +T | 100% | intergenic (+24/+4) | phrA → / ← yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,153 | 1 | . | T | 92.3% | 259.4 / 10.5 | 78 | intergenic (+24/+4) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (5/1); new base T (35/37); total (40/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.01e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
CGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑C‑T‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGC > BS168_reference_genome/1317027‑1317273 | cGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑G‑T‑Ctt‑t‑tttatt > 7:42634/1‑135 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATttcttc < 3:279042/138‑1 (MQ=255) cGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATttcttc < 2:8547/138‑1 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCtttt < 7:93095/137‑1 (MQ=255) tACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTAt > 6:145328/1‑139 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAGAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATc > 8:47975/1‑139 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGCCCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt < 3:33426/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt < 5:399322/137‑1 (MQ=255) ggggATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAg < 5:67150/136‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 1:314453/1‑139 (MQ=255) gTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCaga < 8:223529/138‑1 (MQ=255) gTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCaga < 7:168009/138‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCCCGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 7:357962/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 1:103667/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 3:163760/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCGTCCATTCTTTTATCGTCAGCTCAGAAGATc > 3:65838/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 3:409809/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 3:329210/1‑139 (MQ=255) aaaCAGAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTAAGAAGATCCACTTGCCACCAGCgg > 3:337884/1‑139 (MQ=255) aaaCACAGAAGTGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTAAGGGGAC‑T‑TTT‑TAATTTCTTCAGCTTCCATTATTTTATCGTCAGCACATAAGATCAACTTGcaacaaccg > 2:100282/1‑133 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 3:174686/1‑138 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCGTCCATTCTTTTATCGTCAGCTCAGAAGCTCCACTTGCCACCCGCgg > 2:365391/1‑139 (MQ=255) aaCACAGAAGGGAAAACATTTCATAATGCGGCACGCAATCAAACATGATGCATAAAAACAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGa < 6:254854/139‑1 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCATCTCAGAAGATCCACGTGCCACCAGCGGATCCg > 3:252404/1‑138 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGCTCCGCa > 1:48814/1‑139 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTC‑TATTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCAACTTTCCACCAGCCGATcctc > 1:55251/1‑136 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCATTAGGGGTC‑T‑TTTCT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa > 8:38461/1‑139 (MQ=255) aaGGGAGAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCAt > 3:341210/1‑139 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCAtt < 7:229144/91‑1 (MQ=255) aaGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCAtt > 8:229144/1‑91 (MQ=255) aaaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATc < 8:270144/94‑1 (MQ=255) aaaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATc > 7:270144/1‑94 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGa > 7:254282/1‑139 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGAGCCCCTTGCCACCAGCGGATCCGCATGGCCGa > 1:350100/1‑139 (MQ=255) aaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc > 7:92371/1‑116 (MQ=255) aaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGcc < 8:92371/116‑1 (MQ=255) aaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 4:214994/139‑1 (MQ=255) aaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGAt < 6:115888/139‑1 (MQ=255) aTTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑TTTTCTTAAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATGCCCTTGCCCCCCGCGGATACGCATGGCCGAgttg > 1:372112/1‑138 (MQ=255) ttCATATTTCGTCACGCAATCAAACATGATGAATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTATTAATATTCAATTATTATATAGTCATCGCAGAAAATACAGTTGCCACCAGCAGATCCCCATGGCCGAATTCCg > 2:425473/1‑139 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt < 4:48103/89‑1 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGt > 3:48103/1‑89 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCCTGGCCGATTTCCg > 1:183790/1‑139 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg < 5:160523/138‑1 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGc > 4:179028/1‑139 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 4:147706/138‑1 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTg > 4:371650/1‑139 (MQ=255) tatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGc < 3:371650/139‑1 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc > 4:318442/1‑139 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg < 7:235150/108‑1 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAg > 8:235150/1‑108 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt > 1:186683/1‑133 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 2:186683/133‑1 (MQ=255) gCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct > 5:106362/1‑139 (MQ=255) cGGCACGCAATCAAACATGATTCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 4:341210/138‑1 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCtt > 7:267175/1‑139 (MQ=255) cACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCCGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTc > 1:253135/1‑137 (MQ=255) cATGATGCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCtt < 5:136698/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACGAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 4:65838/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 5:331806/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 8:267175/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 2:103667/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 4:174686/139‑1 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCCCTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 8:221547/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGTC‑TGTTT‑T‑TTTTATTCAGCGTCCATTCTTTTATCGTCAGCGCAGAAGATGCAATTTCCACCCGCGGATCCGCATGGGCTATTTACGCAGGCTCTGCCAGAGAATCTGcatgaa > 2:159283/1‑134 (MQ=255) atgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGACGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 4:23324/139‑1 (MQ=255) atgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 6:339746/139‑1 (MQ=255) tgCCTAAAAAAAGACCATTAGGGGTC‑T‑TTTCT‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 7:38461/138‑1 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCAATCTTTTATCGTCAGCTCATAAGATCCACTTGCCACCACCCGATCCCCATGGACAATTTCCGCTGCCTCATCCAGTGAATATACTTAGaa > 6:142144/1‑137 (MQ=255) cATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGATTCGATTCTTTTATCGTCCGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAAGCTGCTTCGATGa < 5:142144/138‑1 (MQ=255) cATAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑AATTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAACCGCATGGCCGATATCCGCTGACTCTTCCAGTTAAAATGCTTAGCTGa > 6:417577/1‑138 (MQ=255) aTAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 3:179028/139‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 2:183790/139‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 5:145328/139‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGGGAATCTGCTTCGATGACa < 1:235868/139‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGTCTT‑TTT‑T‑ATTACTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 5:270690/139‑1 (MQ=255) aaaaaaaGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATa < 8:254282/139‑1 (MQ=255) aaaaGACCCTTAGGGGTCTT‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCCGCCTCTTCCAGTGAATCTGCTTCGATGACATACGc < 6:219210/139‑1 (MQ=255) | CGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑C‑T‑TTT‑T‑ATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGC > BS168_reference_genome/1317027‑1317273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |