| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | BS168_reference_genome | 2,387,878:1 | +A | 100% | coding (711/735 nt) | yphF ← | putative lipoprotein of unknown function |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 2,387,878 | 1 | . | A | 92.9% | 236.2 / 7.0 | 70 | coding (711/735 nt) | yphF | putative lipoprotein of unknown function |
| Reads supporting (aligned to +/- strand): ref base . (3/2); new base A (35/30); total (38/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑A‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010 | tataTGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCACTATTTGTATGCTAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑t > 7:415630/1‑138 (MQ=255) atatGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a > 6:167711/1‑138 (MQ=255) tatGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a < 5:22242/137‑1 (MQ=255) gtgtATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa > 3:384487/1‑138 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGTGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaa > 8:195360/1‑137 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaa > 3:71677/1‑137 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaa > 3:376851/1‑137 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaa > 8:104879/1‑137 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaa > 1:333888/1‑137 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaa > 8:397819/1‑137 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaa > 3:65425/1‑137 (MQ=255) tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTA‑T‑a‑aaaa‑aaa > 8:364276/1‑137 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCCTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 8:267278/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 8:222051/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 3:345365/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 3:154412/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 3:101534/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 2:372626/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 2:330369/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 2:300209/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 7:293528/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 4:370487/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 8:201717/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATAACATTTTC‑T‑a‑aaaa‑aaacag > 7:14632/1‑135 (MQ=255) tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTACTTTTTCATATCATTTTC‑T‑a‑aaaa‑aaacag > 6:219710/1‑135 (MQ=255) aCGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTAATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCAGTTTC‑TAA‑AAAA‑AA‑CAGGt > 8:88354/1‑139 (MQ=255) gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCTTTTTC‑TAA‑AAAA‑AA‑CAGGTTc > 2:112960/1‑139 (MQ=255) ttGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGACAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTcc > 1:234299/1‑139 (MQ=255) tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCt > 3:264860/1‑139 (MQ=255) tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCt > 5:339253/1‑139 (MQ=255) tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑AAGGTTCCt > 1:225739/1‑139 (MQ=255) gTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑ATAAAA‑AA‑CAGGTTCCTg > 6:326941/1‑139 (MQ=255) tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGt > 5:63839/1‑139 (MQ=255) tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGt > 4:184163/1‑139 (MQ=255) tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGt > 4:278254/1‑139 (MQ=255) tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGt > 6:133959/1‑139 (MQ=255) cTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGttt > 7:174530/1‑139 (MQ=255) cTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGtgt > 3:262091/1‑137 (MQ=255) tttGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGt > 5:82546/1‑138 (MQ=255) tttGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGt > 5:19365/1‑138 (MQ=255) gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGTGTGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCAt < 7:195360/138‑1 (MQ=255) gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCAt < 5:133959/138‑1 (MQ=255) atatGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTa < 8:293528/139‑1 (MQ=255) cTTTAGAAAATTTCTCATCCTCAATCTATTAATAT‑AAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATAttt > 5:209303/1‑139 (MQ=255) aaaTTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAg < 4:264860/138‑1 (MQ=255) aaTTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGaa < 2:333888/139‑1 (MQ=255) aaTTTCTCATACTCAATCTATTAATATAAAAAAACCTTTCTCCCTTTTTGTATGCAAGGGAGAAATGTTCATTCCTTTTTCATATCATTTTCTT‑A‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTAACTTATATTTTACAGaa < 7:213890/139‑1 (MQ=255) tttCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGaaaa > 1:204875/1‑139 (MQ=255) tttCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGaaaa > 4:14135/1‑139 (MQ=255) tttCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTACTGTTTGTCATTTACCGTATAATTTAGAGaaaa > 3:173211/1‑139 (MQ=255) aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgcg < 8:236424/137‑1 (MQ=255) aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgcg < 1:330369/137‑1 (MQ=255) aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCggg < 7:222051/139‑1 (MQ=255) aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCAATTACCGTATATTTTACAGAAAAcgcg < 3:423930/137‑1 (MQ=255) ttAATATAAAAAAACCTTTCTCCCTTAATGTATGCAAGGGAGAATGGTTCAATCCTTTTACTTATCATTTTA‑T‑A‑AAAA‑AACCAGGGAAATGATTGTCATTTACCGTATATTTTTCAGATAACGCGGGTACAAAgggg > 2:301885/1‑137 (MQ=255) taaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGc < 6:209303/138‑1 (MQ=255) aaaaaaCCTTTCTCCATATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCTTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGc > 3:312171/1‑138 (MQ=255) aCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTATC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATc < 5:219710/139‑1 (MQ=255) ccTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCa < 2:225739/139‑1 (MQ=255) ccTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTg < 5:167711/138‑1 (MQ=255) ccTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTg < 4:101534/138‑1 (MQ=255) ccTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTg > 7:54976/1‑138 (MQ=255) aTTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACTGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGAtt > 7:109814/1‑139 (MQ=255) aTTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATg < 5:56115/120‑1 (MQ=255) aTTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATg > 6:56115/1‑120 (MQ=255) tATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGATAACGCGGGGACAAAGGGGGTTTCATGCCACATCATATCCTGTATTTCAGt > 5:151985/1‑139 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGa > 3:87290/1‑97 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGa < 4:87290/97‑1 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACa > 3:271774/1‑99 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACa < 4:271774/99‑1 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc > 1:7548/1‑139 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc > 1:279164/1‑139 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc > 1:253793/1‑139 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTc < 4:65425/138‑1 (MQ=255) tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTc < 4:376851/138‑1 (MQ=255) cAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTccc < 3:184163/138‑1 (MQ=255) gggAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc > 5:212187/1‑110 (MQ=255) gggAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 6:212187/110‑1 (MQ=255) gagaAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGttt < 8:29178/139‑1 (MQ=255) gagaAAGGTTCATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGttt < 4:191452/139‑1 (MQ=255) agaAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑A‑AAAA‑AA‑CAGGTTCGTGTTTGTCATTTACAGTATATTTTAATGAAAACGCGGGGACTAAGGGGGTTTCTTGCGAAATCATATCCTGTCTTTCTGTCCCGGGTGTaa > 6:329699/1‑139 (MQ=255) cATTCCTTTTTCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGttttt > 3:246917/1‑139 (MQ=255) tCCTTTTTCATATAATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACAGTATATTTTACAGAAAACGCTGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTg > 1:299803/1‑139 (MQ=255) ttttCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCttt > 7:191628/1‑139 (MQ=255) tttCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCTGGTTTAATCGTTTTTTTGAtttt > 6:399840/1‑139 (MQ=255) tttCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGc > 1:15969/1‑135 (MQ=255) tttCATATCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGc < 2:15969/135‑1 (MQ=255) atatCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCttttttt < 6:63839/138‑1 (MQ=255) tatCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACTGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGa < 8:109814/139‑1 (MQ=255) tCATTTTC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCTTTTACGGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCCTGCCAAATCATATCCTGGATTTCAGTCCCGGGTTGACACGTTTTTTTGCGTTTTTTGAgg > 8:52995/1‑139 (MQ=255) ttttC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGTAACCGGTGGGTAAAAGGGGGTTTCATGCCAAATCATAACCTGTAATTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 8:415630/139‑1 (MQ=255) ttttC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 2:234299/139‑1 (MQ=255) ttttC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 4:345365/139‑1 (MQ=255) ttttC‑TAA‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 2:279164/139‑1 (MQ=255) atttC‑T‑A‑AAAACAA‑CAGGATCCTGTTTGTCATTTACCGTATAATATACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTCGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 2:155962/138‑1 (MQ=255) | TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTC‑T‑A‑AAAA‑AA‑CAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |