Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | BS168_reference_genome | 2,732,512 | T→C | 7.3% | pseudogene (36/159 nt) | yrdDc ← | hypothetical protein; C‑terminal part of YrdD |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BS168_reference_genome | 2,732,512 | 0 | T | C | 7.3% | 169.3 / 4.2 | 55 | pseudogene (36/159 nt) | yrdDc | hypothetical protein; C‑terminal part of YrdD |
Reads supporting (aligned to +/- strand): ref base T (22/29); new base C (2/2); total (24/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 |
TCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCAC > BS168_reference_genome/2732374‑2732650 | tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTACACTCttt > 2:195759/1‑139 (MQ=255) tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt > 5:198438/1‑139 (MQ=255) tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt > 6:219625/1‑139 (MQ=255) tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt > 3:1785/1‑139 (MQ=255) tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt > 1:83981/1‑139 (MQ=255) tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGATGCCTACACTCttt > 6:28420/1‑139 (MQ=255) tAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCt > 2:253956/1‑139 (MQ=255) aaaTCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATaaaa < 6:387927/138‑1 (MQ=255) aGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCg < 7:232844/138‑1 (MQ=255) aGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGa < 3:234025/139‑1 (MQ=255) ggACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaa < 5:280962/139‑1 (MQ=255) ggACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaa < 5:112631/139‑1 (MQ=255) gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa < 4:248599/139‑1 (MQ=255) gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa > 6:31959/1‑139 (MQ=255) gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa < 8:329561/139‑1 (MQ=255) gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa > 5:213844/1‑139 (MQ=255) tttGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTcc > 8:333069/1‑138 (MQ=255) gTAAAATGATCCATTGAGATCAGTATTCATGATCAGCGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTaa < 6:237027/138‑1 (MQ=255) gTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTaa < 4:125488/138‑1 (MQ=255) gTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTaa < 6:198438/138‑1 (MQ=255) ttGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCgg < 2:83981/139‑1 (MQ=255) ttGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCgg < 7:376022/139‑1 (MQ=255) aTCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCtt > 3:211642/1‑139 (MQ=255) aTCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCtt > 1:167365/1‑139 (MQ=255) tagtCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGACACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAACTGGCGAAACTCCTAATACTTCTATGACGGCTCTTTTAAg > 8:64714/4‑139 (MQ=255) tATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAg > 7:273303/1‑139 (MQ=255) aTGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGAttt > 6:336986/1‑139 (MQ=255) aTGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGAGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGAttt > 6:140792/1‑139 (MQ=255) aaGGGCCAAAATGCCGTCCCCGCATTTTTTAATTAAAGATATGCGACAGTCATTAATTATTTTGCTGCCTAAAATCTTTGCCTTATAAAATGGCGAAACTCCTAATACTTCAATGCCCGCTCTTTTATGGATTTTGaa > 7:156982/1‑138 (MQ=255) aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa > 1:192998/1‑138 (MQ=255) aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa > 5:360728/1‑138 (MQ=255) aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa > 4:189231/1‑138 (MQ=255) aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGaaa > 8:102271/1‑98 (MQ=255) aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGaaa < 7:102271/98‑1 (MQ=255) aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGACATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa > 2:413816/1‑138 (MQ=255) ccGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGccc > 8:172786/1‑138 (MQ=255) gTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCAt > 8:181829/1‑139 (MQ=255) tCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCagt > 1:406984/1‑137 (MQ=255) tCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCAtt < 5:219625/139‑1 (MQ=255) tCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCAtt < 3:189231/139‑1 (MQ=255) aTTTTGAAATAAAATATATGAGACAGTCATTAATCATTTTTCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTa < 5:188227/139‑1 (MQ=255) aTTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTa < 1:253956/139‑1 (MQ=255) aTTTTGAAATAAAAGATATGAGACAGACATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTa < 1:413816/139‑1 (MQ=255) aaaTAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAACTGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTa < 8:284939/139‑1 (MQ=255) aaTAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt < 6:254468/139‑1 (MQ=255) aaTAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt < 5:336986/139‑1 (MQ=255) aaaaGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATccc < 4:1785/139‑1 (MQ=255) aaGATATGAGTCAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATccccc < 8:156982/139‑1 (MQ=255) aaGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTACTACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTCTccccc > 6:26439/1‑139 (MQ=255) aaGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATccccc > 6:20667/1‑139 (MQ=255) aGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATcccccc < 6:213844/139‑1 (MQ=255) aGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATcccccc < 7:172786/139‑1 (MQ=255) tatGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCctgc < 5:31959/139‑1 (MQ=255) aaTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt > 1:195301/1‑115 (MQ=255) aaTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt < 2:195301/115‑1 (MQ=255) aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGAt < 2:192998/138‑1 (MQ=255) aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGAt < 1:195759/138‑1 (MQ=255) aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGAt < 5:119538/138‑1 (MQ=255) aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATc < 8:273303/139‑1 (MQ=255) ttGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGACGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGtt > 1:62530/1‑138 (MQ=255) gcCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGt > 8:22242/1‑139 (MQ=255) ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCctgctg > 3:110458/1‑103 (MQ=255) ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCctgctg < 4:110458/103‑1 (MQ=255) ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCa > 2:138728/1‑139 (MQ=255) ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATGATTGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTATTGTCGGGTTTTTc > 4:104951/1‑138 (MQ=255) tCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCAc > 3:298481/1‑139 (MQ=255) | TCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCAC > BS168_reference_genome/2732374‑2732650 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |