Predicted mutation
evidence seq id position mutation freq annotation gene description
RA BS168_reference_genome 2,732,512 T→C 7.3% pseudogene (36/159 nt) yrdDc ← hypothetical protein; C‑terminal part of YrdD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BS168_reference_genome2,732,5120TC 7.3% 169.3 / 4.2 55pseudogene (36/159 nt)yrdDchypothetical protein; C‑terminal part of YrdD
Reads supporting (aligned to +/- strand):  ref base T (22/29);  new base C (2/2);  total (24/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01

TCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCAC  >  BS168_reference_genome/2732374‑2732650
                                                                                                                                          |                                                                                                                                          
tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTACACTCttt                                                                                                                                            >  2:195759/1‑139 (MQ=255)
tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt                                                                                                                                            >  5:198438/1‑139 (MQ=255)
tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt                                                                                                                                            >  6:219625/1‑139 (MQ=255)
tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt                                                                                                                                            >  3:1785/1‑139 (MQ=255)
tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCttt                                                                                                                                            >  1:83981/1‑139 (MQ=255)
tCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGATGCCTACACTCttt                                                                                                                                            >  6:28420/1‑139 (MQ=255)
    tAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCt                                                                                                                                        >  2:253956/1‑139 (MQ=255)
            aaaTCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATaaaa                                                                                                                                 <  6:387927/138‑1 (MQ=255)
                 aGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCg                                                                                                                            <  7:232844/138‑1 (MQ=255)
                 aGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGa                                                                                                                           <  3:234025/139‑1 (MQ=255)
                  ggACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaa                                                                                                                          <  5:280962/139‑1 (MQ=255)
                  ggACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaa                                                                                                                          <  5:112631/139‑1 (MQ=255)
                   gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa                                                                                                                         <  4:248599/139‑1 (MQ=255)
                   gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa                                                                                                                         >  6:31959/1‑139 (MQ=255)
                   gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa                                                                                                                         <  8:329561/139‑1 (MQ=255)
                   gACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGaaa                                                                                                                         >  5:213844/1‑139 (MQ=255)
                        tttGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTcc                                                                                                                     >  8:333069/1‑138 (MQ=255)
                           gTAAAATGATCCATTGAGATCAGTATTCATGATCAGCGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTaa                                                                                                                  <  6:237027/138‑1 (MQ=255)
                           gTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTaa                                                                                                                  <  4:125488/138‑1 (MQ=255)
                           gTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTaa                                                                                                                  <  6:198438/138‑1 (MQ=255)
                                        ttGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCgg                                                                                                    <  2:83981/139‑1 (MQ=255)
                                        ttGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCgg                                                                                                    <  7:376022/139‑1 (MQ=255)
                                             aTCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCtt                                                                                               >  3:211642/1‑139 (MQ=255)
                                             aTCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCtt                                                                                               >  1:167365/1‑139 (MQ=255)
                                                  tagtCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGACACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAACTGGCGAAACTCCTAATACTTCTATGACGGCTCTTTTAAg                                                                                          >  8:64714/4‑139 (MQ=255)
                                                  tATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAg                                                                                          >  7:273303/1‑139 (MQ=255)
                                                       aTGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGAttt                                                                                     >  6:336986/1‑139 (MQ=255)
                                                       aTGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGAGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGAttt                                                                                     >  6:140792/1‑139 (MQ=255)
                                                            aaGGGCCAAAATGCCGTCCCCGCATTTTTTAATTAAAGATATGCGACAGTCATTAATTATTTTGCTGCCTAAAATCTTTGCCTTATAAAATGGCGAAACTCCTAATACTTCAATGCCCGCTCTTTTATGGATTTTGaa                                                                                 >  7:156982/1‑138 (MQ=255)
                                                            aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa                                                                                 >  1:192998/1‑138 (MQ=255)
                                                            aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa                                                                                 >  5:360728/1‑138 (MQ=255)
                                                            aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa                                                                                 >  4:189231/1‑138 (MQ=255)
                                                            aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGaaa                                                                                                                         >  8:102271/1‑98 (MQ=255)
                                                            aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGaaa                                                                                                                         <  7:102271/98‑1 (MQ=255)
                                                            aaGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGACATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGaa                                                                                 >  2:413816/1‑138 (MQ=255)
                                                                         ccGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGccc                                                                    >  8:172786/1‑138 (MQ=255)
                                                                           gTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCAt                                                                 >  8:181829/1‑139 (MQ=255)
                                                                            tCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCagt                                                                >  1:406984/1‑137 (MQ=255)
                                                                            tCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCAtt                                                                <  5:219625/139‑1 (MQ=255)
                                                                            tCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCAtt                                                                <  3:189231/139‑1 (MQ=255)
                                                                                   aTTTTGAAATAAAATATATGAGACAGTCATTAATCATTTTTCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTa                                                         <  5:188227/139‑1 (MQ=255)
                                                                                   aTTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTa                                                         <  1:253956/139‑1 (MQ=255)
                                                                                   aTTTTGAAATAAAAGATATGAGACAGACATTAATCATTTTGCTGCCTAAACTCTTCCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTa                                                         <  1:413816/139‑1 (MQ=255)
                                                                                         aaaTAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAACTGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTa                                                   <  8:284939/139‑1 (MQ=255)
                                                                                          aaTAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt                                                  <  6:254468/139‑1 (MQ=255)
                                                                                          aaTAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt                                                  <  5:336986/139‑1 (MQ=255)
                                                                                             aaaaGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATccc                                               <  4:1785/139‑1 (MQ=255)
                                                                                               aaGATATGAGTCAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATccccc                                             <  8:156982/139‑1 (MQ=255)
                                                                                               aaGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTACTACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTCTccccc                                             >  6:26439/1‑139 (MQ=255)
                                                                                               aaGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATccccc                                             >  6:20667/1‑139 (MQ=255)
                                                                                                aGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATcccccc                                            <  6:213844/139‑1 (MQ=255)
                                                                                                aGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATcccccc                                            <  7:172786/139‑1 (MQ=255)
                                                                                                   tatGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCctgc                                         <  5:31959/139‑1 (MQ=255)
                                                                                                                  aaTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt                                                  >  1:195301/1‑115 (MQ=255)
                                                                                                                  aaTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTAt                                                  <  2:195301/115‑1 (MQ=255)
                                                                                                                   aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGAt                          <  2:192998/138‑1 (MQ=255)
                                                                                                                   aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGAt                          <  1:195759/138‑1 (MQ=255)
                                                                                                                   aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGAt                          <  5:119538/138‑1 (MQ=255)
                                                                                                                   aTCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATc                         <  8:273303/139‑1 (MQ=255)
                                                                                                                         ttGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGACGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGtt                    >  1:62530/1‑138 (MQ=255)
                                                                                                                              gcCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGt              >  8:22242/1‑139 (MQ=255)
                                                                                                                                         ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCctgctg                                       >  3:110458/1‑103 (MQ=255)
                                                                                                                                         ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCctgctg                                       <  4:110458/103‑1 (MQ=255)
                                                                                                                                         ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCa   >  2:138728/1‑139 (MQ=255)
                                                                                                                                         ttCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATGATTGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTATTGTCGGGTTTTTc    >  4:104951/1‑138 (MQ=255)
                                                                                                                                          tCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCAc  >  3:298481/1‑139 (MQ=255)
                                                                                                                                          |                                                                                                                                          
TCTTTAAATATAAAATCAGGACGATTTGTAAAATGATCCATTGAGATCAGTATTCATGATAAGGGCCAAAATGCCGTCCCCGCATTTTGAAATAAAAGATATGAGACAGTCATTAATCATTTTGCTGCCTAAACTCTTTCCCTGATAAAATGGCGAAACTCCTAATACTTCTATGCCGGCTCTTTTAAGGATTTGGAAAATTTTTTAGCCCCATTTTGATTAATGTTATCCCCCCTGCTGCTATATAATCGATCAAGTTTAATGTCGGGTTTATCAC  >  BS168_reference_genome/2732374‑2732650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: