| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | BS168_reference_genome | 2,344,013 | Δ39 bp | 100% | coding (2570‑2608/2745 nt) | ponA → | peptidoglycan glycosyltransferase (penicillin‑binding proteins 1A and 1B) |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | BS168_reference_genome | 2344013 | 2344051 | 39 | 33 [0] | [0] 33 | ponA | peptidoglycan glycosyltransferase (penicillin‑binding proteins 1A and 1B) |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | BS168_reference_genome | = 2344012 | 0 (0.000) | 28 (0.600) | 22/214 | NT | 100% | coding (2569/2745 nt) | ponA | peptidoglycan glycosyltransferase (penicillin‑binding proteins 1A and 1B) |
| ? | BS168_reference_genome | 2344052 = | 0 (0.000) | coding (2609/2745 nt) | ponA | peptidoglycan glycosyltransferase (penicillin‑binding proteins 1A and 1B) | |||||
ATGATGAGAAGACTCAGGATGATACACAAACTGATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BS168_reference_genome/2343872‑2344012‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacaacaGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGACACATCTAATAAAACACAAACAAACTCATCATCCATTGAAAAAA > BS168_reference_genome/2344052‑2344180 ATGATGAGAAGACTCAGGATGATACACAAACTGAAGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAA < 2:5476/139‑1 TGAGAAGACTCAGGATGATACACAAACTGATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAG > 5:90220/1‑138 TCAGGATGATACACAAACTGATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAG > 2:116699/1‑139 GGATGATACACAAACTGATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGAT < 8:42422/139‑1 GGATGATACACAAACTGATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGAT < 7:300159/139‑1 CAAACTGATGATCCTAAAAAACATGACGGTCAGACGCTTCAAGATCAGACAGATGTTTCAACAAACGAGCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATG < 3:156621/139‑1 AAACTGATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGG > 6:189096/1‑139 ATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTC > 6:96729/1‑139 taCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTA > 5:145140/3‑107 TTCTCAAAAAGATGACGGTCAGACGTATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTA < 6:145140/107‑1 TCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACT > 8:216718/1‑139 CTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTC > 1:45305/1‑139 CTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTC > 1:10250/1‑139 CTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACT < 1:116699/138‑1 AAACGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATATGTCGGATGGTGATTCGAACTCTGGT < 5:99141/139‑1 ATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGT < 8:211785/104‑1 ATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGT > 7:211785/1‑104 ATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAAC < 5:289117/86‑1 ATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAAC > 6:289117/1‑86 GATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACA < 3:114424/139‑1 GACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAA > 5:82547/1‑138 ATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAA > 4:251140/1‑139 ATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAA > 4:241595/1‑139 ATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAA > 8:216468/1‑139 ATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATA < 7:211043/135‑1 ATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATA > 8:211043/1‑135 CAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGA < 7:216718/139‑1 aacCGAGCAACAAAAAAACCACGACAATACGAACACCACTCCGTCCGACAACCGTAACACCCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGAC < 6:32340/136‑1 ACGATCAAGACAAAAAACAAGACATTACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGACA > 5:258434/1‑138 AAAAAACCAGACAATACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCTAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGACACATCTAATAAAA < 4:184192/139‑1 TACGAACACCAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCACCAGGTTCTGCCACGAATAAAAATAAAACTGACACATCTAATAAAACACAAACAAACTCA > 8:265306/1‑139 CAATCCGTCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGACACATCTAATAAAACACAAACAAACTCATCATCCATT > 8:34244/1‑139 TCCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGACACATCTAATAAAACACAAACAAACTCATCATCCATTGAAAAAA > 6:83916/1‑139 CCGACAACAGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGACACATCTAATAAAACACAAACAAACTCATCATCCATTGAAAAAA > 1:152211/1‑138 ATGATGAGAAGACTCAGGATGATACACAAACTGATGATTCTCAAAAAGATGACGGTCAGACGGATCAAGATCAGACAGATGATTCAACAAACGATCAAGACAAAAAACAAGACAATACGAACACCAATCCGTCCGACAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > BS168_reference_genome/2343872‑2344012‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacaacaGTAACAACCAGGATACGTCGGATGGTGATTCGAACTCTGGTAAGAATGATTCAACAGGTTCTGACACGAATAAAAATAAAACAGACACATCTAATAAAACACAAACAAACTCATCATCCATTGAAAAAA > BS168_reference_genome/2344052‑2344180 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |