Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | BS168_reference_genome | 4,165,884 | G→A | 7.0% | G235G (GGC→GGT) | yybS ← | putative integral inner membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BS168_reference_genome | 4,165,884 | 0 | G | A | 7.0% | 178.7 / 3.4 | 57 | G235G (GGC→GGT) | yybS | putative integral inner membrane protein |
Reads supporting (aligned to +/- strand): ref base G (29/24); new base A (2/2); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 |
CAGCAATCACAGCCGCAGCCTTTGGATATTGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGCGA > BS168_reference_genome/4165754‑4166020 | cAGCAATCACAGCCGCAGCCTTTGGATATTGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTc > 1:251127/1‑139 (MQ=255) aTCACAGCCGCAGCCTTTGGATATTGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGACCTTTTTCTAAAg > 3:93866/1‑139 (MQ=255) aTCACAGCCGCAGCCTTTGGATATTGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGACCTTTTTCTAAAg > 3:89681/1‑139 (MQ=255) gCCGCAGCCTTTGGATATTGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCaaa > 6:24387/1‑138 (MQ=255) cAGCCTTTGGATATTGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATg > 4:171164/1‑138 (MQ=255) ttGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCa < 4:200624/119‑1 (MQ=255) ttGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCa > 3:200624/1‑119 (MQ=255) tttCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATc < 8:222604/139‑1 (MQ=255) tATGGCAATAGAAAAAGATAATTGATAAACCTTGGATGAAAATCTGAAACCCGAGTATAAACTCGCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTTAAGGCAAAATTGAAAGAATGACAATAATCTAATa > 1:121848/1‑139 (MQ=255) tATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATa > 7:120120/1‑139 (MQ=255) aTGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGAGAATAATCAAATa < 4:3604/138‑1 (MQ=255) aTGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATa < 7:32810/138‑1 (MQ=255) aTGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATa < 5:24387/138‑1 (MQ=255) aTGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATa < 3:171164/138‑1 (MQ=255) ggCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAg > 4:80838/1‑139 (MQ=255) gCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAg < 8:80246/138‑1 (MQ=255) gCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAg < 2:171079/138‑1 (MQ=255) cAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGta < 3:279060/139‑1 (MQ=255) cAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGta < 3:255365/139‑1 (MQ=255) tAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAATCTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAACGGCAAAAATGAAAGCATGAAAAAAATCAAATACAGtacta > 8:232236/1‑139 (MQ=255) aaTGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCg > 6:58506/1‑139 (MQ=255) aaCCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATa < 8:219143/112‑1 (MQ=255) aaCCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATa > 7:219143/1‑112 (MQ=255) aaCCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACtt > 8:215525/1‑139 (MQ=255) aaCCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGCAAACtt > 1:99926/1‑139 (MQ=255) cTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCaa < 3:80838/139‑1 (MQ=255) cTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCaa < 4:246258/139‑1 (MQ=255) cTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCaa > 1:222750/1‑139 (MQ=255) cTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGACCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCaa < 4:93866/139‑1 (MQ=255) cTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGACCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCaa < 4:89681/139‑1 (MQ=255) cTTCGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTCGCCAATATCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCaa < 2:121848/139‑1 (MQ=255) tGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAAct > 3:255160/1‑139 (MQ=255) ggATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAActc > 1:161989/1‑139 (MQ=255) ggATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAAct < 6:105493/138‑1 (MQ=255) ggATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAAc < 7:215525/137‑1 (MQ=255) aaaTCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTaa > 4:239799/1‑138 (MQ=255) aaaCCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACTATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCttt < 2:251127/139‑1 (MQ=255) aGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACaa < 2:13682/76‑1 (MQ=255) aGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACaa > 1:13682/1‑76 (MQ=255) taAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGaa < 4:199172/138‑1 (MQ=255) cTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCg < 3:239799/139‑1 (MQ=255) cctaTTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCgggg > 2:186729/4‑139 (MQ=255) cccATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTTAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTACAACTCTCTAAAAGGCTTTAGATTAGGAATATCgggg > 8:235697/1‑139 (MQ=255) cccATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAg < 5:210932/78‑1 (MQ=255) cccATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAg > 6:210932/1‑78 (MQ=255) cccATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCgggg > 4:10932/1‑139 (MQ=255) cccATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCgggg > 7:15561/1‑139 (MQ=255) cccATTTAAAGCGATAGAGTACAGCATTTGGCCTTTATCAAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGTAATCATCAACTCTCTAAAAGGCTTTAGATAAGGAATATCtggc > 4:52567/1‑138 (MQ=255) tttAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGgaga < 2:222750/139‑1 (MQ=255) ttAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGaa > 1:123958/1‑139 (MQ=255) ttAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGaa > 5:78246/1‑139 (MQ=255) aaaGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAAt < 3:10932/138‑1 (MQ=255) tAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCtt > 2:134113/1‑137 (MQ=255) atgaCAGCAGTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATCATCAAATACAGTACTACAACAAGTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAagag < 3:212130/136‑1 (MQ=255) cATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCt > 4:170127/1‑137 (MQ=255) cATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAAT‑ATCAAATACAGTACTACAACACTTTCCGGAAACTTCAACTCTCTTAAAGGCTTTAGATAAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAg > 6:73088/1‑139 (MQ=255) ttGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGc > 3:254446/1‑138 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCg > 2:256067/1‑66 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCg < 1:256067/66‑1 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTATATTAGGAATATCGGGGGAGAATCGCCTTAagag < 5:300932/127‑1 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAagag > 6:300932/1‑127 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGCGa > 6:258752/1‑138 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGCGa < 2:161989/138‑1 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGCGa < 1:134113/138‑1 (MQ=255) ggCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGAGGAAACTTCAACTCTCTAATAGGCTTTAGAGTTGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGCGa > 1:30529/1‑138 (MQ=255) ggCCTTATTCTAAAGTCAAAAATGAAAGCATGTCAATACTCAAATACAGTTCTACAACACTTTGCGGAAACTTCAACTCTCTAACAGGCTTTAGATTACGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGCGa < 7:232236/138‑1 (MQ=255) | CAGCAATCACAGCCGCAGCCTTTGGATATTGTTTCTTATGGCAATAGAAAAAGATAAATGATAAACCTTGGATGAAAATCAGAAACCCGAGTATAAACTCCCCATTTAAAGCGATAGAGTACAGCATTTGGCCTTTTTCTAAAGGCAAAAATGAAAGCATGACAATAATCAAATACAGTACTACAACACTTTGCGGAAACTTCAACTCTCTAAAAGGCTTTAGATTAGGAATATCGGGGGAGAATCGCCTTAAGAGCGGCTTAGCGA > BS168_reference_genome/4165754‑4166020 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |