| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 4,155,395 | (A)5→6 | intergenic (‑186/+38) | trnY‑Lys ← / ← purA | tRNA‑Lys/adenylosuccinate synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 4,155,390 | 1 | . | A | 98.2% | 634.1 / 1.7 | 171 | intergenic (‑181/+43) | trnY‑Lys/purA | tRNA‑Lys/adenylosuccinate synthetase |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base A (68/99); total (69/102) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 198 total aligned reads displayed.
GTTCTCATCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAAC‑AAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAGCT > BS168_reference_genome/4155253‑4155521 | gTTCTCATCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACAAACTTATATGCGGCTTTc‑aaac > 2:332800/1‑138 (MQ=255) aTCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aa > 5:85011/1‑137 (MQ=255) aTCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aa > 5:184188/1‑137 (MQ=255) aTCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aa > 6:197366/1‑137 (MQ=255) aTCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTAATATTTTTTTCTCAGACAAACTTATATGCGGCTTTC‑aaac‑aaaa‑aa > 5:391464/1‑137 (MQ=255) gTACTCTATTGAAGCAGTTTCCTTAAAAACGAGATTTATAATATAACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTAATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaa < 5:189900/136‑5 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCTATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaa < 3:92750/136‑5 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaag < 7:40863/137‑6 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaag < 1:363296/137‑6 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaag < 4:176828/137‑6 (MQ=255) gTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaa < 1:246017/136‑5 (MQ=255) ctctATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGcccc < 8:304941/138‑1 (MQ=255) ctctATTGAAGCAGTTTCCGTAACAACGAGATTTAAAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGcccc < 5:498946/138‑1 (MQ=255) ctATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCtt > 4:378567/1‑138 (MQ=255) ctATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTAATATTTTTTTATAATAACAACTTATATTCGGCTTTCAAAAA‑AAAA‑ACAAACCCCtt > 2:247241/1‑138 (MQ=255) tATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGTCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTa > 7:373077/1‑138 (MQ=255) tATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaa < 4:212429/130‑5 (MQ=255) tATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑aaac‑aaaa‑aacaa > 3:212429/1‑126 (MQ=255) tATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCtt < 1:134774/137‑1 (MQ=255) tATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACATAAATGCGGCTTTC‑AAACAAAAA‑ACAAGCCACTTa > 3:330163/1‑138 (MQ=255) gAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATa < 3:493947/138‑1 (MQ=255) gCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAgggg > 8:484140/1‑139 (MQ=255) gCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAACTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTCAATAggtg > 3:256365/1‑137 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCACCTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGTGGCtt > 8:105262/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCtt > 4:236147/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCtt > 1:120816/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCtt > 3:157043/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCtt > 2:179342/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCtt > 2:467193/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGAACAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCtt > 1:302009/1‑139 (MQ=255) gTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGACAATAACTTTATTGGTTTTTTTTCATATTTTTTTCTCAGACAAACTTATATGCGTCTATC‑AAACAAAAA‑ACAAGCACCTTAAATAGTGTCtt > 4:91276/1‑139 (MQ=255) gTTACCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCtt > 2:312615/1‑139 (MQ=255) tCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGc < 7:65383/138‑1 (MQ=255) ccGTAACAACGAGATATATAATATCACGAACAAATAGAAGAGGCAAAAACTTTTTTGGTTTTTTTTCATAATTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCa < 7:387705/138‑1 (MQ=255) cGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAg < 7:19783/138‑1 (MQ=255) gTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGAc < 1:348221/139‑1 (MQ=255) gTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGAc < 3:75834/139‑1 (MQ=255) gTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAACCCCCTTAAATAGGGGCTTGCAGAc < 3:488297/139‑1 (MQ=255) aacGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATAtt < 5:202640/139‑1 (MQ=255) cGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTc > 6:159877/1‑138 (MQ=255) agaTTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTAt > 3:374043/1‑139 (MQ=255) taataTCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTc < 1:215515/139‑1 (MQ=255) atatCCCGATCAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATGTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTgcgc < 7:479705/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATATCTTTTTTGGTTTTTTTTCTTTTTTTTTTCTCAGACCAACTTATATGCGGTTTTC‑AAACAAAAA‑ACATGCACCTTAAATAGTGGCTTGCAGACATATTCTATTTAGTTct < 4:330163/138‑2 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCg < 6:85011/138‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:231296/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 5:144563/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 1:4637/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 1:179342/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 3:186240/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 7:217326/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:139411/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:121507/139‑1 (MQ=255) atatCACGAACAAATAGAAGTGGCAATAACTTATTTGGTTTTTATTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 7:284454/139‑1 (MQ=255) atatAACGAACAAATAGAACTGGCAATAACTTTTTTGGTTTTTTTTCTTATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 5:464982/139‑1 (MQ=255) aaatCACGAACAAATTGAAGTGGCAATAACTTTTTTTGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:47360/137‑1 (MQ=255) tCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCAc < 2:335991/138‑1 (MQ=255) tCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACg > 1:335991/1‑139 (MQ=255) cACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACgg > 3:396985/1‑139 (MQ=255) aCGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGt < 7:59122/139‑1 (MQ=255) cAAATAGAAGTGGCAATCACTTTTTTGGTTTTTTTTCATATTTTTTTATCAGCCCAACTTATATGCGGCTTTC‑AAAC‑AAAACACAAGACCCTTAAATAGGGGCTTGAAGACATATTCTATTTAGTTCGCACGGTacaca < 5:345008/139‑1 (MQ=255) cAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGCGGCTTGCAGACATATTCTATTTAGTTCGCACGGTacaca < 5:159877/139‑1 (MQ=255) aTAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTg > 8:11214/1‑139 (MQ=255) aTAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTg < 3:42221/139‑1 (MQ=255) gAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCg < 6:184188/138‑1 (MQ=255) gAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCg < 6:460281/138‑1 (MQ=255) gCAATAACTTTTTTGGTTTTTTTTCGTATTTTTTTCTAAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACa > 1:61504/1‑139 (MQ=255) gCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTg < 8:210812/94‑1 (MQ=255) gCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATAtt < 8:59922/104‑1 (MQ=255) gCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc > 3:277999/1‑117 (MQ=255) gCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:277999/117‑1 (MQ=255) cTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACAtttgttt < 2:127251/139‑1 (MQ=255) ttttGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACata > 3:233726/1‑92 (MQ=255) ttttGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 4:70909/107‑1 (MQ=255) ttGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGa < 4:345120/138‑1 (MQ=255) tGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAg < 6:338253/138‑1 (MQ=255) atatTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc > 8:453828/1‑92 (MQ=255) atatTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 7:453828/92‑1 (MQ=255) tatTTTTTTCTCAGACCAACTTAATTGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGAc < 5:285153/139‑1 (MQ=255) tttttttCTCAGACCAACTTATATGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACag < 4:374043/139‑1 (MQ=255) atGCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGcc > 8:382400/1‑139 (MQ=255) gCGGCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTg > 6:345323/1‑139 (MQ=255) cgtcTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGAGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGt < 2:61504/136‑1 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc > 5:162620/1‑62 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 6:162620/62‑1 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACg > 3:306026/1‑65 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACg < 4:306026/65‑1 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGt > 4:108486/1‑137 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGt > 7:329112/1‑137 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGt > 3:474788/1‑137 (MQ=255) gCTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGt > 7:418670/1‑137 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGc < 2:443716/61‑1 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTacaca > 1:121709/1‑71 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTacaca > 1:222173/1‑71 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTacaca < 2:222173/71‑1 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTacaca < 2:121709/71‑1 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGa < 6:242225/94‑1 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGa > 5:242850/1‑121 (MQ=255) cTTTC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAg > 7:55014/1‑139 (MQ=255) tC‑AAACAAAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAGCt > 3:380573/1‑138 (MQ=255) | GTTCTCATCTTGTACTCTATTGAAGCAGTTTCCGTAACAACGAGATTTATAATATCACGAACAAATAGAAGTGGCAATAACTTTTTTGGTTTTTTTTCATATTTTTTTCTCAGACCAACTTATATGCGGCTTTC‑AAAC‑AAAA‑ACAAGCCCCTTAAATAGGGGCTTGCAGACATATTCTATTTAGTTCGCACGGTACACACTGCGAAGGACATTTGTTTGTGAGCGGTCTGGACCGACAGAGAAAATAGAAAGCGGAATGCCTGTCAGCT > BS168_reference_genome/4155253‑4155521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |