New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BS168_reference_genome	3484069 =	144 (1.260)	18 (0.290) +AAAGCGCAGCTGAAATAGCTGCGCTTTTTTGTGT	14/184	1.0	24.1%	intergenic (‑295/+3)	cggR/araE	transcriptional regulator of gapA/arabinose‑related compounds permease
	?	Exported	6207 =	12 (0.230)					coding (320/324 nt)	lacZalpha	/vntifkey=4

CCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTC  >  Exported/6070‑6333                                                                                                                                          |                                                                                                                               tgcggtgattaacatcctttgtttcctgtttgtcgttacgatctgtccagaaacgaagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtc                                                                                                                                <  4:64005‑M2/1‑1 (MQ=255)            acatcctttgtttcctgtttgtcgttacgatctgtccagaaacgaagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAagcc                                                                                                                     <  7:96382‑M2/12‑1 (MQ=255)            acatcctttgtttcctgtttgtcgttacgatctgtccagaaacgaacaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAagcc                                                                                                                     <  7:111135‑M2/12‑1 (MQ=255)                cctttgtttcctgtttgtcgttacgatctgtccagaaacgaagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGccc                                                                                                                >  1:217284‑M2/123‑139 (MQ=255)                cctttgtttcctgtttgtcgttacgatctgtccagaaacgaagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGccc                                                                                                                >  1:68823‑M2/123‑139 (MQ=255)                      tttcctgtttgtcgttacgagctgtccacaaacgaataacaaatcgctcgagcaaattgaaaagctttggaaaaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGaca                                                                                                           <  4:8988‑M2/22‑1 (MQ=255)                        tcctgtttgtcgttacgatctgtccagaaacgaagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcacctgaaatagctgcgcttttttgtgtCATAATTAATCCAGACCCGCCAccc                                                                                                        >  5:142995‑M2/115‑139 (MQ=255)                          ttGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCCTCCCCGACACCCGc                                                                                                      >  3:81/1‑139 (MQ=255)                               tgtggttacgatctgtccagaaaccaacaaaaaatcgctctagtaaattgaaacgctttggataaaatcaaaaaacgcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAac                                                                                                  <  2:217284‑M2/31‑1 (MQ=255)                                              tccagaaacgaagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGccc                                                                                  >  1:196423‑M2/93‑139 (MQ=255)                                                 gcgcCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTg                                                                                <  3:76127/138‑1 (MQ=255)                                                     acgaagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACggg                                                                           <  4:479114‑M2/54‑1 (MQ=255)                                                        aagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagggcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCtt                                                                        >  8:185557‑M2/83‑139 (MQ=255)                                                        aagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCCACCCCCGCTGACGCGCCCAgaccggggt                                                                        >  5:314429‑M2/83‑136 (MQ=255)                                                        aagaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttatatgtctCATAATTAAGCCAGACCCGACACCCGCCAACACCCGCTGACGCGCACAGACGGGGtt                                                                        >  7:408911‑M2/83‑139 (MQ=255)                                                          gaacaaatcgctcgaggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGt                                                                      <  2:68823‑M2/59‑1 (MQ=255)                                                                        aggaaattgaaaagctttggataaaatgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATc                                                        <  6:82293‑M2/73‑1 (MQ=255)                                                                                   aagctttggataaactgaaaaaaagcgcagctgaaatagctgcgcttttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGAc                                             <  5:28301‑M2/84‑1 (MQ=255)                                                                                     cGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACa                                            <  7:208616/138‑1 (MQ=255)                                                                                            gataaaatgaaaaaaagcgcagctgaaatagctgcgctttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGa                                              <  3:271149‑M2/83‑1 (MQ=255)                                                                                            gataaaatgaaaaaaagcgcagctgaaatagctgcgctttttgtgtCATAATTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGa                                              >  4:271149‑M2/47‑129 (MQ=255)                                                                                               cacCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGCCGGGCGTGTCTGCTCCCGGCATCCGCTTACAGACCAGCTGTGACCg                                 >  4:470468/1‑139 (MQ=255)                                                                                               cacCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCg                                 <  3:470468/139‑1 (MQ=255)                                                                                                  cGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGa                                    <  4:154141/133‑1 (MQ=255)                                                                                                  cGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGa                                    >  3:154141/1‑133 (MQ=255)                                                                                                              aCTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCa                  <  3:84712/139‑1 (MQ=255)                                                                                                               acagcAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCAt                 <  3:440742/135‑1 (MQ=255)                                                                                                                tctcAGTTCAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTTCTACCGGCATCCCGTGTCGGCCGACGTGTGCCCGGCTCCGGGAGCttcctg                >  6:102212/1‑134 (MQ=255)                                                                                                                              gCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCGGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAACTGTGACCGTCGCCCGGAGCTGCATGTGTCAGAGGtctgt  >  4:440742/1‑135 (MQ=255)                                                                                                                              gCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCAGACGGGCTTGTCTGCAACCGGCATCCCCATACAGACAACCAGTGACAGTCTCCGGGAGCTGCATGTGTCAGAGGtttt   >  8:174313/1‑138 (MQ=255)                                                                                                                                          |                                                                                                                               CCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCATATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACCCGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGACAAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTC  >  Exported/6070‑6333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.