| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 3,994,666 | G→A | A100T (GCG→ACG) | yxjL → | two‑component response regulator [YxjM] |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 3,994,666 | 0 | G | A | 98.7% | 515.8 / NA | 153 | A100T (GCG→ACG) | yxjL | two‑component response regulator [YxjM] |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (67/84); minor base C (0/2); total (67/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 153 total aligned reads displayed.
TCCTCATGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTGCGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTGAGACATTTCGGGCGA > BS168_reference_genome/3994532‑3994801 | tCCTCATGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACggg > 3:388693/1‑139 (MQ=255)tCCTCATGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACggg > 6:379829/1‑139 (MQ=255)tCCTCATGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAAAACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACggg > 4:129832/1‑139 (MQ=255) ccTCATGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGgc > 8:185840/1‑139 (MQ=255) aTGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGATGAATACGTATTTGAAGGCATCCGTACGGGCGCat > 1:60972/1‑138 (MQ=255) aTGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGgcgc < 5:471806/137‑1 (MQ=255) tGGATGTCCAGATGCCGCGTTGCTGAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCAACTTTGACACTGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGt < 1:359933/139‑1 (MQ=255) tGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAgg < 1:171215/139‑2 (MQ=255) tGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGt < 5:379829/139‑1 (MQ=255) tGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGc > 3:452339/1‑139 (MQ=255) gTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCt > 5:373432/1‑139 (MQ=255) gTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATGTTAACCACCTTTGACAAGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGc > 2:326373/1‑138 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCTCTTCCAAATACAAAGATAGTCATTTAAACCACCTTTGACACGGAAGAATACGAATTTGAAGGCCTCCGTACGGGCGCAGTCGGCTa > 6:450591/1‑139 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCTGCTa > 2:335885/1‑139 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCt < 4:452339/138‑1 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCt > 2:62406/1‑138 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCt < 1:62406/138‑1 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTa > 6:397650/1‑139 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTa > 2:187084/1‑139 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTa > 1:404954/1‑139 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTa < 7:224307/139‑1 (MQ=255) tCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTa > 5:475998/1‑139 (MQ=255) tCCAGATGCCGCGTGGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCt < 6:465608/138‑1 (MQ=255) cAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTAt < 2:35632/138‑1 (MQ=255) cAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTAt < 2:404954/138‑1 (MQ=255) gATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATctg < 1:123106/139‑1 (MQ=255) tGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATctgct < 8:260763/139‑1 (MQ=255) tGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGGCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATctgct < 8:344745/139‑1 (MQ=255) ccGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATctgctg < 3:71895/138‑1 (MQ=255) cgcgTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGaa < 4:462294/139‑1 (MQ=255) gCTCAGGCATCGAAGCGGCGAAAGACATTATGTGCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac < 8:419088/139‑1 (MQ=255) gCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTGGGCTATCTGCTGAAGGATa < 4:212899/138‑1 (MQ=255) gCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac < 2:27238/139‑1 (MQ=255) cTCAGGCATCGAAGCGGCGAAAGACATTTTGTCCTCACTTCCAAATCCATAGATAGTCATTTTAACCACCTTTGAGACGTAAGAATACGTATTTGAAGGCTTCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac < 1:251342/138‑1 (MQ=255) cTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac < 5:178619/138‑1 (MQ=255) cTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac < 3:340571/138‑1 (MQ=255) gcAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATacac < 7:405513/138‑1 (MQ=255) gAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATCGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTgag < 6:180260/138‑1 (MQ=255) gAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTgag > 5:453297/1‑138 (MQ=255) gAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTgag > 6:478372/1‑138 (MQ=255) gAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTgag < 7:291917/138‑1 (MQ=255) cggcgAAAGACATTATGTCCGCACTTCAAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGtt < 4:236090/139‑1 (MQ=255) ggcgAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGgcgc > 1:122399/1‑99 (MQ=255) ggcgAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGgcgc < 2:122399/99‑1 (MQ=255) ggcgAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATctgct > 1:197978/1‑114 (MQ=255) ggcgAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATctgct < 2:197978/114‑1 (MQ=255) ggcgAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGtt > 8:48450/1‑138 (MQ=255) gcgAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGa > 6:500378/1‑139 (MQ=255) gcgAAAGACATTATGGCCGCACATCCAAATACAACGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGACGGCATCCGTACGGGCGCAGTCGGCTAGCTGCTGAAGGATACACTTCCTGAGGAGTTGa < 6:198062/139‑1 (MQ=255) cGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCGTCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCt > 6:83756/1‑139 (MQ=255) cGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCt < 4:388693/139‑1 (MQ=255) cGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCt < 7:48450/139‑1 (MQ=255) cGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCCGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCt > 6:276511/1‑139 (MQ=255) gCACTTCCAAATACAAAGATAGTCATTTAACCCACCTTTGACACGGAAGACTACGTATTTGAAGGCATCCGTCCGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTg < 1:335885/139‑1 (MQ=255) cACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGc > 8:322397/1‑139 (MQ=255) aCTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTgag < 8:43882/112‑1 (MQ=255) aCTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTgag > 7:43882/1‑112 (MQ=255) aCAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAgaggcg < 1:151424/139‑1 (MQ=255) cAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAgaggcg < 6:373432/138‑1 (MQ=255) cAAAGATAGTCATTTTAACCACCTTTCACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAgaggcga < 1:187084/139‑1 (MQ=255) aaaGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAgaggcgag > 7:137961/1‑139 (MQ=255) aGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATacac < 5:194004/90‑1 (MQ=255) aGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAgaggcgaggc > 6:288206/1‑139 (MQ=255) aGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAgaggcgaggc > 6:439944/1‑139 (MQ=255) gtttgTCATTTTAACATCCTTTGACTCGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGTAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCGAGaggcgaggcg < 8:137961/135‑1 (MQ=255) gTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac < 4:402457/83‑1 (MQ=255) gTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac > 3:402457/1‑83 (MQ=255) tCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGAgttt > 4:155426/1‑139 (MQ=255) cATTTTAACCACCTTCGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTc > 2:49525/1‑139 (MQ=255) tttAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCTATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCg > 4:163139/1‑138 (MQ=255) ttAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGt < 3:163504/138‑1 (MQ=255) accaccTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAg > 6:457148/1‑139 (MQ=255) accaccTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCAGAAGGATACACTTCCAGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGACGCGAGCCGAATTTcccaaaa > 4:293859/1‑133 (MQ=255) caccTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGaggcgaggcg < 7:13902/124‑1 (MQ=255) caccTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGaggcgaggcg > 8:13902/1‑124 (MQ=255) ccTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGt < 6:350420/49‑1 (MQ=255) ccTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGt > 5:350420/1‑49 (MQ=255) tGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAg < 5:439944/137‑1 (MQ=255) tGACACGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAg < 3:436201/137‑1 (MQ=255) acacGGAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAgctg < 5:500378/138‑1 (MQ=255) ggAAGAATACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTaaa < 1:428371/139‑1 (MQ=255) gaagaaTACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTAt > 3:121185/1‑45 (MQ=255) gaagaaTACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac < 4:104295/59‑1 (MQ=255) gaagaaTACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATac > 3:104295/1‑59 (MQ=255) gaagaaTACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCt < 7:127040/66‑1 (MQ=255) gaagaaTACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTaaaa > 7:33952/1‑139 (MQ=255) gaagaaTACGTATTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTaaaa > 4:198317/1‑139 (MQ=255) aTTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGt > 5:343880/1‑136 (MQ=255) aTTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGt > 3:175632/1‑136 (MQ=255) aTTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGt > 1:292343/1‑136 (MQ=255) aTTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTgag > 1:347683/1‑139 (MQ=255) aTTTGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTga < 2:292343/138‑1 (MQ=255) ttGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCt > 4:121785/1‑80 (MQ=255) ttGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCt < 3:121785/80‑1 (MQ=255) tGAAGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTgag > 1:320168/1‑55 (MQ=255) aaGGCATCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTGAGACAtt > 4:417795/1‑139 (MQ=255) aTCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTGAGACATTTCggg > 6:116025/1‑139 (MQ=255) aTCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTGAGACATTTCggg > 7:182567/1‑139 (MQ=255) tCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGCGGCGATTTTCCGGTCAGTCACAGCTGCTAAAATCATCAGTGAGCCATTTCGGGc > 5:486450/1‑139 (MQ=255) tCCGTACGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTGAGACATTTCGGGc > 2:360002/1‑139 (MQ=255) | TCCTCATGGATGTCCAGATGCCGCGTTGCTCAGGCATCGAAGCGGCGAAAGACATTATGTCCGCACTTCCAAATACAAAGATAGTCATTTTAACCACCTTTGACACGGAAGAATACGTATTTGAAGGCATCCGTGCGGGCGCAGTCGGCTATCTGCTGAAGGATACACTTCCTGAGGAGTTGATAGATGCGATTCGCGCTGCGGCCAGAGGCGAGGCGATTTTCCGTACAGTCACAGCTGCTAAAATCATCAGTGAGACATTTCGGGCGA > BS168_reference_genome/3994532‑3994801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |