Predicted mutation
evidence seq id position mutation freq annotation gene description
RA BS168_reference_genome 3,059,481 Δ1 bp 9.2% intergenic (‑80/+66) ytnP ← / ← trmB putative quorum‑quenching lactonase/tRNA (guanine‑N(7)‑)‑methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*BS168_reference_genome3,059,4810A. 9.2% 176.1 / 12.9 65intergenic (‑80/+66)ytnP/trmBputative quorum‑quenching lactonase/tRNA (guanine‑N(7)‑)‑methyltransferase
Reads supporting (aligned to +/- strand):  ref base A (22/37);  new base . (3/3);  total (25/40)
Fisher's exact test for biased strand distribution p-value = 6.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTTTTTTCATTGACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCAGAGAATTTTTCTTCATATTC  >  BS168_reference_genome/3059343‑3059615
                                                                                                                                          |                                                                                                                                      
tttttttCATTGACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCa                                                                                                                                        >  7:264215/1‑139 (MQ=255)
tttttttCATTGACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTACATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATGTTCa                                                                                                                                        >  4:139225/1‑139 (MQ=255)
   ttttCATTGACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAcc                                                                                                                                      <  3:135750/138‑1 (MQ=255)
     ttCATTGACTGGATATTTTTTAGACCAAAGAGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAcccc                                                                                                                                    <  8:209245/138‑1 (MQ=255)
        aTTGACTGGATATTTTTTAGCCCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGGCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAccccccct                                                                                                                                <  7:319291/139‑2 (MQ=255)
         ttGACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAcccccc                                                                                                                                  <  6:296406/136‑1 (MQ=255)
         ttGACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAcccccc                                                                                                                                  >  5:296406/1‑136 (MQ=255)
           gACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAccccccctat                                                                                                                              <  3:288601/138‑4 (MQ=255)
                            aCCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGAAAACgg                                                                                                           >  6:115429/1‑139 (MQ=255)
                                 aGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCa                                                                                                       >  2:232052/1‑138 (MQ=255)
                                      cTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATaaaaa                                                                                                 <  4:315738/139‑1 (MQ=255)
                                           gCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACa                                                                                            <  2:109364/139‑1 (MQ=255)
                                                aCGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAACAGACTcc                                                                                      >  5:14161/1‑139 (MQ=255)
                                                aCGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCACGTCAACGTGAAGATTCCAATTTACATTGTTTCCATATTCCCCCCCCCTATCATCATGGTAGCAAACCGCCCATAAAAAAAACAGACTc                                                                                       >  8:305367/1‑139 (MQ=255)
                                                         aTGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAACAGACTCCTGTCAGAgt                                                                             <  6:14161/139‑1 (MQ=255)
                                                          tGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCCTCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgt                                                                             <  1:7247/139‑1 (MQ=255)
                                                          tGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgt                                                                             <  7:357333/139‑1 (MQ=255)
                                                          tGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgt                                                                             >  3:49715/1‑139 (MQ=255)
                                                          tGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGAGGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgt                                                                             <  5:16505/139‑1 (MQ=255)
                                                          tGGCGCCGCCGTCCATATGCGTCACGCCTCCGCCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCCCCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgt                                                                             <  5:191144/139‑1 (MQ=255)
                                                           ggCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTAtcatca                                                                                                                        <  8:365517/95‑1 (MQ=255)
                                                           ggCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTAtcatca                                                                                                                        >  7:365517/1‑95 (MQ=255)
                                                            gcgcCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCCCCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAACACAGACTCCTGTCAGAgtc                                                                            <  8:237422/138‑1 (MQ=255)
                                                            gcgcCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTCTTACCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACACCTGTCAGAgt                                                                             <  5:216275/137‑1 (MQ=255)
                                                             cgcCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgtctg                                                                          <  6:112785/139‑1 (MQ=255)
                                                                  ccGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTCATGTTTCCAATTTTCATTGTTTACATTTTCACCCAAACTATCATAATGGTAGCAAACGGCCCATAAAAAAAACAGACACCTGTAAGAGTCTGTCtt                                                                      >  7:345628/1‑138 (MQ=255)
                                                                   cGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgt                                                                             <  1:357910/130‑1 (MQ=255)
                                                                   cGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAgt                                                                             >  2:357910/1‑130 (MQ=255)
                                                                   cGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTAGGAGTCTGTCtata                                                                    >  6:190099/1‑139 (MQ=255)
                                                                     tCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACg                                                                  >  3:286897/1‑139 (MQ=255)
                                                                       cATATGCGTCAAGCCTCCGTCAAGCAAGTTCAACTTTATGTTTCCAATTTTAATTGTTTCCATTTTAACCCCCGCTATAATCATGGTAGAAAACGGCCCATAAAAAAAACAGACTCCTGTCAGATTCTGTCTTTACGtt                                                                <  1:124430/139‑1 (MQ=255)
                                                                        atatGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTtc                                                               <  8:264215/139‑1 (MQ=255)
                                                                        atatGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTtc                                                               <  1:232052/139‑1 (MQ=255)
                                                                             cGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTACTGTCAGAGTCTGTCTTTACGTtcaacat                                                          >  2:176555/1‑134 (MQ=255)
                                                                              gTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCAtt                                                         <  1:176555/139‑1 (MQ=255)
                                                                              gTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCAtt                                                         <  1:234603/139‑1 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAACCGGCCCATAAAAAAAACAGACTCCTGTCAGCGTCTGCCTGTACGTTCTCCAtt                                                         >  5:78913/1‑138 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTc                                                                                       <  7:367172/108‑1 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTc                                                                                       >  8:367172/1‑108 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCAtt                                                         >  3:32971/1‑138 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCAtt                                                         >  6:272748/1‑138 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTc                                                        <  3:120689/139‑1 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTc                                                        <  5:190099/139‑1 (MQ=255)
                                                                               tCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCACAGTCTGTCTTTACGTTCTCCAtt                                                         >  5:296695/1‑138 (MQ=255)
                                                                                  cGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAcccc                                                                                                                                    >  2:269879/1‑61 (MQ=255)
                                                                                  cGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCAcccc                                                                                                                                    <  1:269879/61‑1 (MQ=255)
                                                                                  cGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAAc                                                     >  2:185388/1‑139 (MQ=255)
                                                                                    ccTCCGTCAAGCCAGGTCAACGTGATGGTTCCAATTTTCAATGTTTCCATTTTCACCCCCCCTATCATCATGGTCGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCt                                                   <  3:139225/139‑1 (MQ=255)
                                                                                        cGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGc                                               >  4:182813/1‑139 (MQ=255)
                                                                                        cGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGc                                               >  4:45922/1‑139 (MQ=255)
                                                                                        cGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCCCCCCCACTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCAGGACAGAGTCTGTCTTTACGTTCTCCATTCAGCCTCAGc                                               >  3:91353/1‑139 (MQ=255)
                                                                                          tCAAGCCAGGTCAACGTGATGTTTAAAATTTTAATTGTTTCATTTTTCACCCGCCGTATCATCATTGTAGCAAACTGCCCATAAAAAAAAAAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAAGCTCAGccc                                             <  8:345628/139‑1 (MQ=255)
                                                                                                cAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGa                                       <  4:49715/139‑1 (MQ=255)
                                                                                                cAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGa                                       <  4:295694/139‑1 (MQ=255)
                                                                                                        cGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGtt                                                                >  5:228048/1‑106 (MQ=255)
                                                                                                        cGTGATGTTTCCAATTTTCATTGTTTCCATTTTCCCCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGtt                                                                <  6:228048/106‑1 (MQ=255)
                                                                                                         gggaggTTTCCAATTTTCATTGTTTCAATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGc                              <  4:32971/134‑1 (MQ=255)
                                                                                                                 tCCAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGc                       >  3:177811/1‑138 (MQ=255)
                                                                                                                  ccAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCa                      <  1:99559/138‑1 (MQ=255)
                                                                                                                  ccAATTTTCATTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCGGTCTTTACGTTCTCCATTCACCCTCAGCCCGATAGATCGGCTGGCCGAGTGCa                      <  7:125293/138‑1 (MQ=255)
                                                                                                                  ccAATTTTCATTGTTTCCATTTTCCCCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGGCTGTCTTTACGTTCTCCATTCAACCACAGCCCGAAAGATCCGCTGCCCGAGTGCag                     >  4:172315/1‑139 (MQ=255)
                                                                                                                           aTTGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCAGAGAAttttt            <  4:177811/139‑1 (MQ=255)
                                                                                                                            ttGTTTCCATTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCAGAGAATTTttc           <  8:327948/139‑1 (MQ=255)
                                                                                                                                    aTTTTCACCCCCCCTATCATCATGGTAGCAAACGTCCCATAAAAAAAACAGACTCCTGTCAGAGTATGTCTTTACGTTCTCCATTCAACCTCCGCCCGATAGATCGGCTGGCCGAGTGCAGATAATTTTTCTTCATAtt   <  3:251895/139‑1 (MQ=255)
                                                                                                                                    aTTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCAGAGAATTTTTCTTCATAtt   <  5:115429/139‑1 (MQ=255)
                                                                                                                                    aTTTTCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGGCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCAGAGAATTTTTCTTCATAtt   <  5:272748/139‑1 (MQ=255)
                                                                                                                                      tttCACCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCAGAGAATTTTTCTTCATATTc  <  1:161757/138‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                      
TTTTTTTCATTGACTGGATATTTTTTAGACCAAAGCGGCTTTGGCACAACGCCGAACATGGCGCCTCCGTCCATATGCGTCACGCCTCCGTCAAGCCAGGTCAACGTGATGTTTCCAATTTTCATTGTTTCCATTTTCACCCCCCCCTATCATCATGGTAGCAAACGGCCCATAAAAAAAACAGACTCCTGTCAGAGTCTGTCTTTACGTTCTCCATTCAACCTCAGCCCGATAGATCGGCTGGCCGAGTGCAGAGAATTTTTCTTCATATTC  >  BS168_reference_genome/3059343‑3059615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: