New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BS168_reference_genome	2152031 =	58 (0.910)	9 (0.160)	9/200	NT	15.5%	pseudogene (406/420 nt)	spsMn	spore capsular polysaccharide biosynthesis enzyme fragment; N‑terminal part of SpsM
	?	BS168_reference_genome	= 2286432	48 (0.870)					intergenic (+24/‑16)	sprA/spsMc	serine‑type phage integrase; phage SPbeta/sporulation capsular polysaccharide biosynthesis enzyme C‑terminal end; restored upon phage SPbeta excision

AACATGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCTTGTTTTGTTCGGTCCGCTTTGGAAATGTTCTC  >  BS168_reference_genome/2286301‑2286567                                                                                                                                    |                                                                                                                                        aaCCTGACACAAAACAGCACAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAATGTTTAATTTCATTTTTGACCTCACAGCCACTACTAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagata                                                                                                                                  >  2:340559‑M2/1‑132 (MQ=255) aaCATGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagata                                                                                                                                  >  2:115397‑M2/1‑132 (MQ=255) aaCATGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagat                                                                                                                                   <  4:160452‑M2/138‑7 (MQ=255)  aCATTACAAAAAAAAGAAAATGGCCTATACCATCTCAATTTGAAATAAACACTATCCTAAGGTTTAATTTCATTTTTGAACTCACATAAACTAATAGTTTCCACTAAGAAAAGTATTAAGTATCTTAAAAAACAGATaa                                                                                                                                 <  8:59092/139‑1 (MQ=255)  aCATGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagata                                                                                                                                  >  3:265248‑M2/1‑131 (MQ=255)     tGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagc                                                                                                                              >  3:160452‑M2/1‑128 (MQ=255)     tGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaa                                                                                                                                >  6:224407‑M2/1‑128 (MQ=255)     tGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaa                                                                                                                                <  5:224407‑M2/137‑10 (MQ=255)      gACACAATAAATAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAATGTTTAATTTCATTTTTGACCTCAAAGACACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagc                                                                                                                              >  1:178453‑M2/1‑127 (MQ=255)         acaAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagc                                                                                                                              >  1:341990‑M2/1‑124 (MQ=255)         acaAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagc                                                                                                                              <  2:341990‑M2/135‑12 (MQ=255)           aaaaaaGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTAtc                                                                                                                        <  5:316347/139‑1 (MQ=255)            aaaaaGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagctgtatat                                                                                                                       >  6:1104‑M2/1‑121 (MQ=255)                    aagGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGaa                                                                                                               <  4:92701/139‑1 (MQ=255)                    aagGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGaa                                                                                                               <  5:81154/139‑1 (MQ=255)                    aagGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGaa                                                                                                               <  1:290099/139‑1 (MQ=255)                                  gCTCAATTTGAACTAACACCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAACAAACAGATAAAGCTGTATCTCCTGTGAACACAATCGGTGcca                                                                                                 >  7:273792/1‑139 (MQ=255)                                  gCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTGCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCtgtg                                                                                                                 >  7:207890/1‑123 (MQ=255)                                  gCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTGCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCtgtg                                                                                                                 <  8:207890/123‑1 (MQ=255)                                  gCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagctgtatattaagatacttactacatatct                                                                                                  <  7:118214‑M2/138‑40 (MQ=255)                                  gCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGcca                                                                                                 >  2:77194/1‑139 (MQ=255)                                   cTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGccac                                                                                                >  2:301593/1‑139 (MQ=255)                                   cTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGccac                                                                                                >  5:22029/1‑139 (MQ=255)                                      aaTTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGccacc                                                                                               <  6:290682/137‑1 (MQ=255)                                                  ccccTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACAGAATGGGTGCCACAAAGCTGTTATCTg                                                                                  >  1:207547/1‑138 (MQ=255)                                                  ccccTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTg                                                                                  >  2:261582/1‑138 (MQ=255)                                                  ccccTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTg                                                                                  >  7:238635/1‑138 (MQ=255)                                                  ccccTATCCTAAGGTTTAATTTCAATTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTCAACACAATGTGTGCCACCAACCTGTTATCTg                                                                                  >  6:95296/1‑138 (MQ=255)                                                     cTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGaa                                                                                >  1:332238/1‑137 (MQ=255)                                                          cTAAGGGTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTg                                                                          <  2:308592/138‑1 (MQ=255)                                                             aGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagctgtatattaagatacttactacatatctaacgaaaaaaagaagcttactctgcctt                                                                      <  6:169831‑M2/139‑68 (MQ=255)                                                             aGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGttt                                                                       >  6:310819/1‑138 (MQ=255)                                                             aGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGttt                                                                       >  3:91531/1‑138 (MQ=255)                                                             aGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGttt                                                                       >  4:273504/1‑138 (MQ=255)                                                                  tAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagctgtatattaagatact                                                                                                              <  4:157082‑M2/94‑28 (MQ=255)                                                                  tAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagctgtatattaagatact                                                                                                              >  3:157082‑M2/1‑67 (MQ=255)                                                                  tAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTtcatc                                                                   >  7:273468/1‑137 (MQ=255)                                                                  tAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTtcatc                                                                   >  7:4190/1‑137 (MQ=255)                                                                         aTTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAAcc                                                          >  1:73724/1‑139 (MQ=255)                                                                          tttttGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCg                                                         >  2:229271/1‑139 (MQ=255)                                                                          tttttGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCg                                                         >  1:186938/1‑139 (MQ=255)                                                                          tttttGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGCTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCg                                                         >  7:356652/1‑139 (MQ=255)                                                                             ttGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGcc                                                       <  5:31499/138‑1 (MQ=255)                                                                             ttGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGcc                                                       <  6:268676/138‑1 (MQ=255)                                                                                      caGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCaaaa                                             <  8:4190/139‑1 (MQ=255)                                                                                           actactAGTTTCCACTAAGCAAAGTAGTAAGTATCTTAATAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAg                                        <  1:154176/139‑1 (MQ=255)                                                                                           aCTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAg                                        <  5:49097/139‑1 (MQ=255)                                                                                           aCTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAg                                        <  8:238635/139‑1 (MQ=255)                                                                                            cTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAgg                                       <  7:195936/139‑1 (MQ=255)                                                                                            cTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAg                                        >  8:195936/1‑138 (MQ=255)                                                                                             tAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGa                                      <  1:15026/139‑1 (MQ=255)                                                                                                tAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAAcc                                   <  4:91531/139‑1 (MQ=255)                                                                                                tAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAAcc                                   <  1:348585/139‑1 (MQ=255)                                                                                                   tttCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGcc                                                       <  3:213243/116‑1 (MQ=255)                                                                                                   tttCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGcc                                                       >  4:213243/1‑116 (MQ=255)                                                                                                   tttCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGaa                                     <  5:127223/134‑1 (MQ=255)                                                                                                   tttCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGaa                                     >  6:127223/1‑134 (MQ=255)                                                                                                   tttCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCttg                                >  5:339196/1‑139 (MQ=255)                                                                                                     tCCACTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagctgtatattaagatacttactacatatctaacgaaaaaaagaagcttactctgccttcctttccagagcagcttctaataaatgttgagcaaattgt                              <  3:343162‑M2/139‑108 (MQ=255)                                                                                                     tCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCaaa                                                            <  5:64246/109‑1 (MQ=255)                                                                                                     tCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCaaa                                                            >  6:64246/1‑109 (MQ=255)                                                                                                     tCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCttgtt                              >  8:348474/1‑139 (MQ=255)                                                                                                     tCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCttgtt                              >  3:220044/1‑139 (MQ=255)                                                                                                     tCCACTAAGAAAAGTAGTAAGTATCTAAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCtagtt                              >  6:229707/1‑139 (MQ=255)                                                                                                        aCTAAGAAAAGTAGTAAGTATCTTAAAAAacagataaagctgtatattaagatacttactacatatctaacgaaaaaaagaagcttactctgccttcctttccagagcagcttctaataaatgttgagcaaattgttta                           <  3:329536‑M2/139‑111 (MQ=255)                                                                                                             gAAAAGTACTAAGTATCTTAAAAAacagataaagctgtatattaagatacttactacatatctaacgaaaaaaagaagcttactctgccttcctttccagagcagcttctaataaatgttgagcaaattgtttataaaa                      >  1:224142‑M2/1‑24 (MQ=255)                                                                                                                        agtaTCTTAAAAAacagataaagctgtatattaagatacttactacatatctaacgaaaaaaagaagcttactctgccttcctttccagagcagcttctaataaatgttgagcaaattgtttataaaactcatctaagt           <  1:257713‑M2/139‑127 (MQ=255)                                                                                                                        agtaTCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCTTGTTTTGTTCGGTCCGCTTTgg            >  1:123459/1‑138 (MQ=255)                                                                                                                         gtaTCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCTTGTTTTGTTCGGTCCGCTTTGGaa          <  3:273504/139‑1 (MQ=255)                                                                                                                          taTCTTAAAAAacagataaagctgtatattaagatacttactacatatctaacgaaaaaaagaagcttactctgccttcctttccagagcagcttctaataaatgttgagcaaattgtttataaaactcatctaagtca         >  7:358539‑M2/1‑11 (MQ=255)                                                                                                                                aaaaaaCAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCTTGTTTTGTTCGTTCCGCTTTGGAAATGTtct   >  5:33910/1‑139 (MQ=255)                                                                                                                                 aaaaaCAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCTTGTTTTGTTCGGTCCGCTTTGGAAATGTtctc  <  6:22029/139‑1 (MQ=255)                                                                                                                                 aaaaaCAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCTTGTTTTGTTCGGTCCGCTTTGGAAATGTtctc  <  2:73724/139‑1 (MQ=255)                                                                                                                                    |                                                                                                                                        AACATGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATTTCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAAGAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAAAGGAACCTTGTTTTGTTCGGTCCGCTTTGGAAATGTTCTC  >  BS168_reference_genome/2286301‑2286567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.