New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	BS168_reference_genome	= 2653333	56 (0.880)	6 (0.100)	6/222	NT	14.2%	pseudogene (341/471 nt)	sigKn	RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (N‑terminal half)
	?	BS168_reference_genome	2701367 =	19 (0.310)					pseudogene (30/417 nt)	sigKc	RNA polymerase sporulation‑specific sigma‑K factor precursor (Sigma‑27) (C‑terminal fragment)

ATGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGATAGATAC  >  BS168_reference_genome/2701229‑2701504                                                                                                                                           |                                                                                                                                           aTGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                            <  1:325955/139‑1 (MQ=255)              aTTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCAtt                                                                                                                               >  7:341095/1‑139 (MQ=255)                 tAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                            >  6:2366/1‑123 (MQ=255)                 tAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGtaatgaataatgaa                                                                                                                                            <  5:2366/123‑1 (MQ=255)                    ggTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTgcgcg                                                                                                                         >  1:324028/1‑139 (MQ=255)                      tATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCa                                                                                                                       <  1:182497/139‑1 (MQ=255)                       gatgcagaggacttaatctccatcggaacgatcgggcttattaaaggaattgaaagctattccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaAATCCTCATGCATTTGCGCGCAt                                                                                                                      >  3:10627‑M2/117‑139 (MQ=255)                         ccccTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCAtt                                                                                                                     >  8:303974/1‑138 (MQ=255)                                     cTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCTCGCATTGAAAAAAACaaa                                                                                                         >  8:259394/1‑138 (MQ=255)                                           catcggaacgatcgggcttattaaaggaattgaaagctattccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGAc                                                                                                 >  1:96802‑M2/97‑139 (MQ=255)                                            aCGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATGGAAAAAATCAAAAAA‑AGACg                                                                                                >  6:11200/1‑139 (MQ=255)                                                 taataaTTTATAACACAATACTCACTAATCTTTTATATCGTCTAACTGTTCCGGTTAATTTCTGCCCCCCCTTTTTGTAATTAAAAATGAAATCCTCTTGCATTTCCGCCAATTCAAAAAAAAAAAACA‑CCACGtctc                                                                                            <  6:169867/133‑1 (MQ=255)                                                     atcgggcttattaaaggaattgaaagctattccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCtt                                                                                        >  6:183215‑M2/87‑138 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCAc                                                                                     >  3:183634/1‑138 (MQ=255)                                                        ttattaCAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCAc                                                                                     >  4:220240/1‑138 (MQ=255)                                                           cttattaaaggaattgaaagctattccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCAcgatc                                                                                 >  4:139053‑M2/81‑139 (MQ=255)                                                                 gAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCACTATCCGATCg                                                                           >  8:7191/1‑139 (MQ=255)                                                                        aCTCAACATTTATTTAGTCAAACTCTTACGGGAAATTTATGCCCCCCCTATTTGTAATGAATAATGAAATGCTCATCCATTTGCCCGCATTGAAAAAAACAAAAAA‑AGACGACTCCCTTCACGATCCGATCGGGCAGGa                                                                    >  1:227462/1‑139 (MQ=255)                                                                        aCTAAACATTTATTTAGACAAATTGTTACGTTAAATTTACCCCCCCCATTTTTTTAATGAATAATTAAATCCAAATGCATTTGCGCGCATTTAAAAAAAAAAAAAA‑CCACGTCTCCCTTCACGATCCGATCGGGCAgg                                                                     <  1:40577/138‑1 (MQ=255)                                                                                tattccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaAATCCTCATGCATTTgcg                                                                                                                           <  2:35379‑M2/18‑1 (MQ=255)                                                                                tattccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaAATCCTCATGCATTTgcg                                                                                                                           >  1:35379‑M2/60‑77 (MQ=255)                                                                                  ttccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaa                                                                                                                                            <  7:303203‑M2/1‑1 (MQ=255)                                                                                  ttccgctggaaaagggacaaagctggcgacgtatgcagcgaggtgtattgaaaatgaa                                                                                                                                            >  8:303203‑M2/58‑58 (MQ=255)                                                                                   atttaGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATTCATTTGCGCTCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAggg                                                          >  3:18454/1‑138 (MQ=255)                                                                                     ttaGTAAAAGTGTTACGTGAATTTTATGCCCCCCATTTTTGTAATTAATAATTTAATACTCATTCATTTGCGCGATTTTAAAAAAAAAAAAAA‑CGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGaa                                                        <  3:304512/138‑1 (MQ=255)                                                                                     ttaCTCAAATTGTTCCGCTAAATTTCCCCCCCCCGTTTTTTTAAATAAAAATTAAATCCTCATCCTTTTGCGCGAATTCAAAAAAAAAAAAAA‑CCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGaa                                                        <  8:341095/138‑1 (MQ=255)                                                                                         tCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGaaa                                                   >  6:136659/1‑139 (MQ=255)                                                                                                                               aattaaaaataacATCCTCATGAATTTCCGCG‑ATAAAAAAAAAAAAAAAACCCACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCATGATTGACGTTTTGAAATCAGAAAACGAAGa              <  7:303974/138‑1 (MQ=255)                                                                                                                                attaataattaaATCCTCATTCTTTTCCGCGAATTTAAAAAAAAAAAAAA‑CGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGAc             <  7:7191/135‑1 (MQ=255)                                                                                                                                atgaataatgaaATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACg            >  3:142580/1‑139 (MQ=255)                                                                                                                                atgaataatgaaATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACg            >  7:288884/1‑139 (MQ=255)                                                                                                                                           aaTCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGCCGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTGTTGAAATCAGAAAAAGAAGACGTGATAGATAc  >  1:202969/1‑138 (MQ=255)                                                                                                                                           |                                                                                                                                           ATGTAGCTTGGTTATTTAAGGTATCCCCTTCATTCGCTAAGAAACGTTTAAGCATTTATTACAGGAAACTGACTCAACATTTATTTAGTCAAACTGTTACGGGAAATTTATGCCCCCCCTTTTTGTAATGAATAATGAAATCCTCATGCATTTGCGCGCATTGAAAAAAACAAAAAA‑AGACGTCTCCCTTCACGATCCGATCGGGCAGGATAAGGAAGGGAATGAAATAAGCCTGATTGACGTTTTGAAATCAGAAAACGAAGACGTGATAGATAC  >  BS168_reference_genome/2701229‑2701504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.