Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | BS168_reference_genome | 2,360,680 | G→A | 6.0% | A17A (GCG→GCA) | ypjC → | putative integral inner membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | BS168_reference_genome | 2,360,680 | 0 | G | A | 6.0% | 217.5 / 2.6 | 67 | A17A (GCG→GCA) | ypjC | putative integral inner membrane protein |
Reads supporting (aligned to +/- strand): ref base G (27/36); new base A (2/2); total (29/38) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.91e-01 |
TTTAAGCACGTTTGCTGTTTTCTTTTTCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGCCCCTCTATATCGAACC > BS168_reference_genome/2360551‑2360801 | tttAAGCACGTTTGCTGTTTTCTTTTTCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAAtttt < 8:69066/138‑1 (MQ=255) gCACGTTTTCTGTTTTCTTTTTCATACACTATAATATAAACGCTATCTAATGGAAGCAAAAGGGGTGTTGAGGGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTTATCGGAGCGGCAATTTTTTCAtt < 4:242395/139‑1 (MQ=255) gTTTGCTGTTTTCTTTTTCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGc > 5:31837/1‑139 (MQ=255) tttGCTGTTTTCTTTTTCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCt < 3:34694/139‑1 (MQ=255) tttCTTTTTCATCCACTATAATATAATCGCTATCTAATGGAAGTAAATGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCa < 2:228313/138‑1 (MQ=255) ttCTTTTTCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCAtt > 1:83006/1‑139 (MQ=255) ttCTTTTTCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCAtg > 6:303374/1‑138 (MQ=255) tttttCATCCACTATAATATAAACTCTATCTAATGGAAGGAAAAGGGGTTTTGTGGGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCa < 4:35915/139‑1 (MQ=255) ttttCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCa < 8:270945/138‑1 (MQ=255) tttCATACACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCa < 6:283855/137‑1 (MQ=255) aCTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGaa < 7:339101/139‑1 (MQ=255) aCGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCt > 7:147602/1‑137 (MQ=255) aCGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCt > 8:177561/1‑137 (MQ=255) aCGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCt > 8:357737/1‑137 (MQ=255) aCGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCt > 8:314659/1‑137 (MQ=255) aCGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCAGCAATTTTTTCATTTGGCTTGGTTCACTTCAATATGCAAAACAATCTGGCt > 8:206035/1‑137 (MQ=255) gCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAgg > 4:120054/1‑139 (MQ=255) ctttCTTATGGATGGAAAAGGGGTTTTGTGTGATGCTTGGAGTTATTAGTTTAAAAATCATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCATTATGCTGAAGAATCTGGCTGAggg < 8:361636/136‑1 (MQ=255) tCTAATTGAAGGAAAAGGGGTTTTGTGTTATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAggg < 8:140282/136‑1 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCa < 7:140548/106‑1 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCa > 8:140548/1‑106 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATg < 6:69257/116‑1 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATg > 5:69257/1‑116 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCt < 3:212273/131‑1 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGc < 2:359820/137‑1 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCgg > 1:117521/1‑139 (MQ=255) tCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTAATTTCAATATGCAGAACAATCTGGCt > 4:212273/1‑131 (MQ=255) gaaggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTATTCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTAc < 3:109031/138‑1 (MQ=255) gaaggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTAc < 7:15997/138‑1 (MQ=255) aaggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAg > 4:249122/1‑139 (MQ=255) aaggaaAAGGGGTTTTCTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATCCAGAACAAACTGGCTGAGGCCGGTTTTACAg > 7:361636/1‑139 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCa > 3:109017/1‑101 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCa < 4:109017/101‑1 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTCCAgg > 7:274923/1‑138 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTAc > 2:96142/1‑135 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTAc < 1:96142/135‑1 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAgg > 5:113642/1‑138 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCAGCAATTTTTTCAtt < 5:63314/84‑1 (MQ=255) ggaaAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCAGCAATTTTTTCAtt > 6:63314/1‑84 (MQ=255) aaGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCAGCAATTTTTTCATTTGGCTTGGTTCACTTCAATATGCAAAACAATCTGGCTGAGGGCGGTTTTACAGGCATTa < 7:206035/139‑1 (MQ=255) ttGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTg > 7:296773/1‑139 (MQ=255) ttGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTg > 2:155918/1‑139 (MQ=255) tagtgtgATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTAATTTGGCTTGGTTCATTTCAATATGCAGAACAATCAGGCTGAGGGCGGTTTTACACGAATTACACATTTg > 4:8790/3‑139 (MQ=255) tgATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTa < 2:83006/139‑1 (MQ=255) gATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTGATTTCAATATTCAGACCAATCTTGCTGAGGGGGGTTTTTCAGGTTTTACTCTTTTGCTatat > 4:220130/1‑139 (MQ=255) aTGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCTATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATg < 3:8790/139‑1 (MQ=255) tGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGccc < 8:19188/137‑1 (MQ=255) tGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGccc > 7:19188/1‑137 (MQ=255) ggAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATACAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCttt > 1:48895/1‑139 (MQ=255) gATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAg < 1:11639/139‑1 (MQ=255) gATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAg < 7:314659/139‑1 (MQ=255) gATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAg < 1:155918/139‑1 (MQ=255) gATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAg < 7:357737/139‑1 (MQ=255) gATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAg < 8:291530/139‑1 (MQ=255) gATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAg < 7:99661/139‑1 (MQ=255) gATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAg < 5:173993/139‑1 (MQ=255) aTTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGc > 6:41177/1‑139 (MQ=255) aTTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGc < 1:108468/139‑1 (MQ=255) aTTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCAATTCAATATGCAGAACAATCTTGCTGAGTGCGGTTTTACAGGTATTACACTATTGATATATGCCCTTTTCCACATCAGc > 4:345744/1‑139 (MQ=255) aaaaaCATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCCTTTGGCTTGGTTCATTTCAAAATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGGATTACACTTTAGCTTTATGCCCTTTTCCACATCAGcccc < 5:256688/138‑1 (MQ=255) aaaaaCATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCa < 4:107288/61‑1 (MQ=255) aaaaaCATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCa > 3:107288/1‑61 (MQ=255) atatTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGCCCCTCTatat < 6:113642/139‑1 (MQ=255) tatTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGCCCCTCTATATc < 5:18376/139‑1 (MQ=255) ttattttaATCGGAGCGTCAATTTTTTCTTTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGTGGGCGGTTTTACAGGTATTACACTTTTTCTTTATGCCCTTTTCCTCATCAGCCCCTCTATATCGAAcc < 3:345744/138‑1 (MQ=255) ttattttaATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGCCCCTCTATATCGAAcc < 6:31837/138‑1 (MQ=255) ttattttaATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGCCCCTCTATATCGAAcc < 7:177561/138‑1 (MQ=255) | TTTAAGCACGTTTGCTGTTTTCTTTTTCATCCACTATAATATAAACGCTATCTAATGGAAGGAAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGCCCCTCTATATCGAACC > BS168_reference_genome/2360551‑2360801 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |