| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | BS168_reference_genome | 1,317,158 | (T)5→6 | coding (257/258 nt) | yjpA ← | putative enzyme |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BS168_reference_genome | 1,317,153 | 1 | . | T | 98.6% | 233.8 / ‑3.2 | 71 | intergenic (+24/+4) | phrA/yjpA | secreted inhibitor of the activity of phosphatase RapA (quorum sensing)/putative enzyme |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (43/27); total (43/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.62e-01 | |||||||||||
TGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑C‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317020‑1317275 | tgttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTAATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTGAGGG‑‑‑G‑tcttt > 6:225419/1‑139 (MQ=255) ttgCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑G‑tcttttt > 3:186524/1‑137 (MQ=255) tCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCt > 2:337840/1‑139 (MQ=255) tCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCt > 3:211194/1‑139 (MQ=255) tCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAAAACAGAAGGGAAAACATTTCATATTTCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTAAGGGGT‑CTTTTTTATTTCTTCAGCt > 3:127812/1‑139 (MQ=255) aCTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATc > 3:316810/1‑139 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 1:67890/137‑1 (MQ=255) aGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 5:251855/137‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 8:138496/1‑135 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 7:138496/135‑1 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 4:263914/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 7:242697/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 1:152685/1‑139 (MQ=255) gTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGc > 2:385398/1‑139 (MQ=255) gagggctCATGCAGGGGAAACAGCAAACACAGAAGCGAAAACATTTCATATTGCGGCACGGAATCAAACATGAAGCATAAAAAAAGACCCTTAGGGGTAT‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTc < 1:419881/133‑1 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCAtt > 5:72279/1‑122 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCAtt < 6:72279/122‑1 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 4:225952/1‑137 (MQ=255) aTGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCt > 2:362865/1‑137 (MQ=255) gTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCaga < 1:133387/138‑1 (MQ=255) gTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCaga < 1:32721/138‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTTTTTGTTCCGCTTCCATTCTTTTATCGTCAGCTCCGAAGATc > 1:421624/1‑139 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt > 3:153123/1‑125 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGt < 4:153123/125‑1 (MQ=255) aTGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACACTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 3:432540/1‑139 (MQ=255) cAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCAc < 7:160299/139‑1 (MQ=255) ggTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGCAGATCCACtt > 6:44869/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAtctc > 2:424544/1‑125 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTc < 1:424544/125‑1 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 1:190588/1‑139 (MQ=255) gTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTg > 5:91358/1‑139 (MQ=255) aaaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCg > 2:325299/1‑138 (MQ=255) aaCACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGa > 4:309619/1‑139 (MQ=255) acacAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAt < 4:186524/139‑1 (MQ=255) aGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAATATCCACTTGCCACCAGCGGATCCg > 8:31259/1‑138 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa < 7:313446/139‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCa < 6:22218/139‑1 (MQ=255) gAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCGTGCATTCTTTTATCGTCCGCTCAGCAGCTCCACTTGCCACCAGCGGATccccc > 7:303398/1‑136 (MQ=255) gggAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATgg < 8:125352/139‑1 (MQ=255) ggAACACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGc < 8:172470/139‑1 (MQ=255) ggAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGc > 5:195124/1‑139 (MQ=255) aaaCATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGa > 1:245306/1‑139 (MQ=255) ttCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCg > 7:454881/1‑139 (MQ=255) tCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGc > 8:399202/1‑139 (MQ=255) cATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt > 2:129595/1‑139 (MQ=255) atatTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCt < 4:211194/138‑1 (MQ=255) ttGCGGCACGCAATCAAACATGATGCATAAAAAAAGCCCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCct < 1:8868/139‑1 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc > 8:398631/1‑96 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATc < 7:398631/96‑1 (MQ=255) tGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctc > 5:156173/1‑139 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGCTCCACGTGCCACCAGCGGCTCCGCATGGCCGATGTCCGGTGCCTAtt > 8:118378/1‑139 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 4:127812/138‑1 (MQ=255) cGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCctct < 6:363495/138‑1 (MQ=255) ggCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTc > 3:176867/1‑139 (MQ=255) gCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTc > 5:205764/1‑138 (MQ=255) cGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCTGt > 4:244103/1‑139 (MQ=255) cAATCAAACATGATGCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGa < 2:152685/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 1:337840/139‑1 (MQ=255) tgatgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCg < 6:195124/139‑1 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTGTTCAGCTTCCATTGTTTTATCGTGAGATAATAAGATCGCCTTGCCACCCGCGGATGCGCATGGCCGATTTGCGGGGCCAGTTGCAGGGGATCTGcggc > 1:271982/1‑134 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTc > 1:375809/1‑137 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 2:265301/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 7:208262/1‑139 (MQ=255) gatgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGa > 4:412429/1‑139 (MQ=255) atgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 1:362865/139‑1 (MQ=255) tgCATAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCTCTTGCCACCCGCGGATCCGCATGGCCGAATTCCGCTGCCTCTTCCAGTGAATCTGCTTCGAt < 7:155179/138‑1 (MQ=255) aTAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa < 4:328727/139‑1 (MQ=255) tAAAAAAAGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACa > 2:1423/1‑138 (MQ=255) aaaaaaGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATACACTTGCCACCAGCGGa < 6:112926/85‑1 (MQ=255) aaaaaaGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATACACTTGCCACCAGCGGa > 5:112926/1‑85 (MQ=255) aaaaaaGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATACACTTGCCACCAGCGGa > 1:131742/1‑85 (MQ=255) aaaaaaGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATACACTTGCCACCAGCGGa < 2:131742/85‑1 (MQ=255) aaGACCCTTAGGGGT‑CTTTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGAGCCGCATGGCCGCTTTCCGCTGCCTCTTCCAGTGAATATGCTTCGATGACATACGCTc > 6:322146/1‑139 (MQ=255) | TGTTGCTCGTTGCGGTCGGGTTCAGCTTTACTCAGGTGATGGTTCATGCAGGTGAAACAGCAAACACAGAAGGGAAAACATTTCATATTGCGGCACGCAATCAAACATGATGCATAAAAAAAGACCCTTAGGG‑‑‑C‑TTTTTATTTCTTCAGCTTCCATTCTTTTATCGTCAGCTCAGAAGATCCACTTGCCACCAGCGGATCCGCATGGCCGATTTCCGCTGCCTCTTCCAGTGAATCTGCTTCGATGACATACGCTC > BS168_reference_genome/1317020‑1317275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |