| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP006881 | 1,662,121 | (AGCTGAAAGCC)2→1 | 38.4% | coding (806‑816/1464 nt) | U712_08545 → | putative flagellar hook‑length control protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP006881 | = 1662120 | 51 (0.630) | 29 (0.390) | 24/210 | NT | 38.4% | coding (805/1464 nt) | U712_08545 | putative flagellar hook‑length control protein |
| ? | CP006881 | 1662132 = | 47 (0.640) | coding (817/1464 nt) | U712_08545 | putative flagellar hook‑length control protein | |||||
CTTAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1661973‑1662120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgaaagccTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG > CP006881/1662132‑1662265 CTTAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAG > 6:357136/1‑139 TAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCT > 8:92380/1‑139 TAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCT > 1:90726/1‑139 TAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAAATTTACTCGATTACAGAGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGTGACCAAAAAATGGAGTATAGCT > 5:146654/1‑139 AACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGA < 7:257141/139‑1 AACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGC < 3:345047/136‑1 GCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGC < 5:357136/139‑1 CAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC > 2:33606/1‑139 ATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC > 3:291001/1‑136 AGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCAT > 5:360721/1‑139 GTCAAGTTCAAAACTTTACTCGATGACATCGTAAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTAAAAAAGTGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATAGAAATCATC < 5:162368/139‑1 AGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAA > 8:382156/1‑139 GTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCG < 4:89045/136‑1 ACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACA < 2:386349/139‑1 ACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAAAGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAACGCCTTCTTGTTATCGAAATCATCCGAATCATCACA < 2:380891/139‑1 TACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGAC > 2:319849/1‑139 TACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCGTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAG < 8:216492/137‑1 TCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGAC > 4:267962/1‑136 AGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAG < 6:91564/139‑1 AGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAG < 7:382156/139‑1 AGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAAAGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAA < 4:291001/136‑1 AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGTGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACAC < 1:294495/137‑1 AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAAGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGA < 2:323220/125‑1 AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAAGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGA > 1:323220/1‑125 ATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAA > 3:69335/1‑135 TATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATC > 2:252489/1‑139 CTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT < 1:33606/139‑1 CTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT < 1:319849/139‑1 CTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATC < 4:69335/135‑1 CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTT > 6:221241/1‑139 CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT < 7:331512/136‑1 CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT > 8:331512/1‑136 AAAGGGACCAAAGAATGGAGGTTAGCTGAACGCCTTCTTGTTATCGAAATCAGCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAACTGCATCGGATGTTTCTGGA < 6:232560/139‑1 ACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATT < 1:64200/139‑1 AAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTC < 3:267962/136‑1 GAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCT < 7:92380/139‑1 AATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCAGCCAGCAAAAATGCATCGGAGGTTTCTGGAAGTATTCAGC > 4:226640/1‑136 TGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCGCTCGCAGAGTTCATCCAGCTAAAATGCATCTGATGTTTCTGGAAGTATTCAGACTGTA < 6:389584/139‑1 AGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCATAAATGCATCGGATGTTTGTGGAAGTATTCTGCGTGTAGATTGTAA > 1:203504/1‑139 AGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTA > 7:199068/1‑138 AAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAG < 8:362699/139‑1 AAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG < 6:205228/139‑1 AAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG < 2:153159/139‑1 AAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG < 8:356395/139‑1 CTTAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1661973‑1662120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgaaagccTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG > CP006881/1662132‑1662265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |