Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 3,827,109 | G→A | 5.8% | P316L (CCG→CTG) | U712_19740 ← | Catalase‑2 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 3,827,109 | 0 | G | A | 5.8% | 229.3 / 3.1 | 69 | P316L (CCG→CTG) | U712_19740 | Catalase‑2 |
Reads supporting (aligned to +/- strand): ref base G (29/36); new base A (2/2); total (31/38) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.73e-01 |
AGCCGCCCCTGCAATAGCGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTCAACCTTGCCGCCGTTTTCAATTGTTTCCCACAGGT > CP006881/3826971‑3827244 | aGCCGCCCCTGCAATAGCGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCg > 7:362402/1‑139 (MQ=255) aGCCGCCCCTGCAATAGCGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCg > 7:367466/1‑139 (MQ=255) ccgccCCTGCAATAGCGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGc < 8:229856/139‑1 (MQ=255) aaTAGCGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGct < 3:378414/136‑1 (MQ=255) cGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGc < 8:367466/139‑1 (MQ=255) cGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGc < 8:362402/139‑1 (MQ=255) ggTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCgg < 3:297151/136‑1 (MQ=255) ggTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca < 7:32173/139‑1 (MQ=255) ggTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca < 2:417735/139‑1 (MQ=255) ggTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca > 1:386549/1‑139 (MQ=255) cATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca > 3:347476/1‑136 (MQ=255) cATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCAGCACAAGCTCTTCCGGCca > 3:314366/1‑136 (MQ=255) ttGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCgg > 4:292297/1‑131 (MQ=255) ttGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCgg < 3:292297/131‑1 (MQ=255) ttGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCt < 1:17923/139‑1 (MQ=255) tAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCtt < 4:152285/136‑1 (MQ=255) tAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGt < 6:190127/139‑1 (MQ=255) tAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGt < 5:386644/139‑1 (MQ=255) tAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGt < 7:47956/139‑1 (MQ=255) tAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCAGCACAAGCTCTTCCGGCCACAGCtt < 4:314366/136‑1 (MQ=255) aaaTCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGtt < 7:115513/138‑1 (MQ=255) aaTCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTcc < 2:295166/122‑1 (MQ=255) aaTCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTcc > 1:295166/1‑122 (MQ=255) tGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAg > 7:217038/1‑129 (MQ=255) tGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAg < 8:217038/129‑1 (MQ=255) tGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCAGCACAAGCTCTTCCGGc < 7:11751/119‑1 (MQ=255) tGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCAGCACAAGCTCTTCCGGc > 8:11751/1‑119 (MQ=255) ccGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTcc > 3:301141/1‑113 (MQ=255) ccGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTcc < 4:301141/113‑1 (MQ=255) tttCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATatcaaaatca > 7:412011/1‑138 (MQ=255) gTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCTATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGATGGGTCAAGAATATCAAAATCAAACTTGaag > 8:308927/1‑138 (MQ=255) gTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAAt > 1:156994/1‑139 (MQ=255) gAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAAt > 4:382181/1‑136 (MQ=255) cGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATc < 3:154209/136‑1 (MQ=255) cGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTc < 1:6977/139‑1 (MQ=255) agACTTGTTCTGTTTCCGCAAAGACATTATACTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGATCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTc < 5:288053/138‑1 (MQ=255) aCTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCtt < 4:168421/136‑1 (MQ=255) aCTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCt < 2:310439/139‑1 (MQ=255) aCTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCt < 5:421848/139‑1 (MQ=255) gTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCtcat < 2:386549/138‑1 (MQ=255) cTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCtt > 4:32096/1‑88 (MQ=255) cTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCtt < 3:32096/88‑1 (MQ=255) cTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTAATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCtcat > 4:328769/1‑135 (MQ=255) tttCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCatcaatca > 7:359108/1‑138 (MQ=255) tttCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAatcat > 7:51047/1‑139 (MQ=255) tttCCGCAAACAAATTAACCTGCTTGCGGTGCAGCGTCAGGTTTCCAATGGTCTTCACCGGCACAAGCTCTTGCGGCCACAGCTATGTTGGGTCAAGAATATCAAAATCAACCTTGAAGTCAGCTTCCTCatcaatcag > 6:389166/1‑138 (MQ=255) ttCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGt < 1:372895/87‑1 (MQ=255) ttCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGt > 2:372895/1‑87 (MQ=255) gCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca < 7:327465/74‑1 (MQ=255) gCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca > 8:327465/1‑74 (MQ=255) acacATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCCCAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGcc > 1:100684/1‑139 (MQ=255) cacaTTAACCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTACACCGGCACAAGCTCTTCCGGACAAAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATATACCTCATCAATCATCTGCACGcc > 2:30316/1‑138 (MQ=255) cacaATATCCTGATTTCTGTTCAGCGTCATTTTTCCAATTATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTTAATTCAGCTTCCTCATCAATCATCTCCACg < 4:1461/136‑1 (MQ=255) aTTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGc < 8:412011/139‑1 (MQ=255) gATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTAtt > 2:3009/1‑138 (MQ=255) aTTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTc > 1:194441/1‑138 (MQ=255) aTTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTc > 8:407389/1‑138 (MQ=255) aTTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGATGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCATCATCAATCATCTGCACGCCGAGCTCGTATTc > 7:21793/1‑138 (MQ=255) gCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTg > 4:177463/1‑91 (MQ=255) gCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTg < 3:177463/91‑1 (MQ=255) gCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTc > 3:147418/1‑135 (MQ=255) cGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca < 4:40548/53‑1 (MQ=255) cGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCca > 3:40548/1‑53 (MQ=255) ggTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCCCAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAAGTGATCTTACTCATCAATCATCTGCACGCCGCGCTCGGTTTCACCCtt > 8:407215/1‑139 (MQ=255) tCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAAGTCATCTTCCTCCTCAATCATCTGCACGCCGCGCTCGTATTCACCCtt > 4:254883/1‑136 (MQ=255) tcGTCATTTTTCCATTGATGTGCACCGGAACAAGCTCTTCCGGCCACAGCTTAGTTGTGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTCAACCTTgccgcc < 7:206823/138‑1 (MQ=255) gTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTCAACCTTgccgc > 3:273770/1‑136 (MQ=255) ccccGGCACAAGCTCTTCCGGCCACAGCTTAGATGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCCTCACACATCTGCACGCCGAGCTCGTATTCAACCTTGCCGCCGTTTTCAATTGTTTc < 3:270611/130‑1 (MQ=255) cACCGGCACCAGCTCTTCCGGCCACAGATTAGTTGGGGCAAGAATATCAACATCAAACTTGAATTCATCTTCCTCATCACTCATCTGCACGCCGAGCTCGTAGTCAACCTTGCCGCCGCTTTCAATTGTTTCCca < 5:389166/135‑1 (MQ=255) cACCGGCACACGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTCAACCTTGCCGCCGTTTTCAATTGTTTCCca < 7:306512/135‑1 (MQ=255) aCCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTCAACCTTGCCGCCGTTTTCAATTGTTTCCCACAGGt < 2:156994/139‑1 (MQ=255) | AGCCGCCCCTGCAATAGCGGGTCATTGGTAAAATCGATGCCCGGCACGACATTTCCCGGGTGGAATGCGACTTGTTCTGTTTCCGCAAACACATTATCCTGATTGCGGTTCAGCGTCATTTTTCCAATGATCTTCACCGGCACAAGCTCTTCCGGCCACAGCTTAGTTGGGTCAAGAATATCAAAATCAAACTTGAATTCATCTTCCTCATCAATCATCTGCACGCCGAGCTCGTATTCAACCTTGCCGCCGTTTTCAATTGTTTCCCACAGGT > CP006881/3826971‑3827244 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |