Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 1,439,072 | C→A | 5.7% | A137S (GCA→TCA) | U712_07375 ← | putative MFS‑type transporter ykuC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 1,439,072 | 0 | C | A | 5.7% | 231.6 / 2.3 | 69 | A137S (GCA→TCA) | U712_07375 | putative MFS‑type transporter ykuC |
Reads supporting (aligned to +/- strand): ref base C (40/25); new base A (2/2); total (42/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.41e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
CAGCCCGGAAATGATAAAGCTGACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGTAAATAAAGTGAAA > CP006881/1438941‑1439208 | cagcCCGGAAATGATAAAGCTGACAAAATCAACAAAAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTc < 2:310227/139‑1 (MQ=255) agcCCGGAAATGATAAAGCTGACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCg < 5:76478/139‑1 (MQ=255) gAAATGATAACGCTGACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCAt < 4:296549/136‑1 (MQ=255) gAAATGATAAAGCTGACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAAt < 2:227857/139‑1 (MQ=255) aTAAAGCTGACAAAATCAAGAATAATGGCGCCTTCAATCCCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCt > 1:336299/1‑139 (MQ=255) aTAAAGCTGACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTcc < 6:76584/138‑1 (MQ=255) tAAAGCTGACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTc < 3:100921/136‑1 (MQ=255) aaacgCTCACAAAATCAACAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTc < 3:27926/132‑1 (MQ=255) gACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGa < 1:410439/139‑1 (MQ=255) aCAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGc < 3:420006/135‑1 (MQ=255) aCAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGaa > 7:82329/1‑139 (MQ=255) aCAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGaa > 1:401274/1‑139 (MQ=255) aCAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGa < 1:131104/138‑1 (MQ=255) aaTCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGc < 7:395800/139‑1 (MQ=255) gAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTAc > 6:348640/1‑139 (MQ=255) ccTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCtt < 2:294102/94‑1 (MQ=255) ccTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCtt > 1:294102/1‑94 (MQ=255) tCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGttt > 4:315611/1‑135 (MQ=255) cAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGc > 6:175119/1‑139 (MQ=255) cGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGCCTTGTACCAAACTGTTTTCTGCCGga > 1:208337/1‑137 (MQ=255) aTTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCtt < 6:36420/82‑1 (MQ=255) aTTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCtt > 5:36420/1‑82 (MQ=255) aTTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGgaaag > 2:55765/1‑138 (MQ=255) aTTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGACGCTTTCGCATAATGCTCCTTCGGCAGAATGGc < 5:429334/110‑1 (MQ=255) aTTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGACGCTTTCGCATAATGCTCCTTCGGCAGAATGGc > 6:429334/1‑110 (MQ=255) gtgtTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGgaaagaaa < 7:341405/138‑1 (MQ=255) gtgtTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGgaaag > 4:12880/1‑135 (MQ=255) aaaCGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCACACTGTTTTCTGCCGGAAAGAAAAACTTTGTTa > 7:199680/1‑137 (MQ=255) aaaCGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGt > 3:426490/1‑135 (MQ=255) aaaCGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTa > 7:260415/1‑137 (MQ=255) aaaCGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTa > 2:2924/1‑137 (MQ=255) cgcCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCt > 1:46539/1‑139 (MQ=255) gcCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAgcg < 4:363383/136‑1 (MQ=255) cTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCt > 3:56972/1‑136 (MQ=255) aTGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTc > 3:325101/1‑136 (MQ=255) aTGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGACg < 3:225021/55‑1 (MQ=255) aTGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGACg > 4:225021/1‑55 (MQ=255) tGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGa > 7:34062/1‑138 (MQ=255) aCTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATTCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGataaat > 1:384565/1‑138 (MQ=255) aCTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGataaat > 6:209353/1‑138 (MQ=255) aCTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGataaat > 6:127592/1‑138 (MQ=255) tCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATTCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGataaat > 1:179461/1‑136 (MQ=255) tCCAAACACCATAAAAATGCTAAAAAGCATCTCATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGAAGAATGGCTTGTACCAAACTGTTTTATGCCGCAAAGAAAAACATTGTTACAGCTCTTCTGataaat > 5:75983/1‑136 (MQ=255) ccAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGataaat > 4:235399/1‑135 (MQ=255) aaaCACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATa < 2:179461/139‑1 (MQ=255) ccATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATTCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACaaaa < 8:260415/139‑1 (MQ=255) cATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACaaaa > 6:254046/1‑138 (MQ=255) aTAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACaaaaaa > 5:108366/1‑139 (MQ=255) aTAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACaaaaa > 1:413153/1‑138 (MQ=255) aaaaaTGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAAc > 7:7106/1‑138 (MQ=255) aaaaTGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTACTGATAAATAAGATACAAAAAACaa < 1:118769/139‑1 (MQ=255) aaaTGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAag < 7:94664/139‑1 (MQ=255) tGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAAGTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAagag > 6:364472/1‑138 (MQ=255) tGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCtt > 2:187634/1‑110 (MQ=255) tGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCtt < 1:187634/110‑1 (MQ=255) tGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAagag > 8:261155/1‑138 (MQ=255) cTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGaa > 1:324854/1‑139 (MQ=255) aaaaGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAGGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGaa > 3:335255/1‑136 (MQ=255) gCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATAtt < 3:173670/136‑1 (MQ=255) gCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATAtt < 3:317940/136‑1 (MQ=255) gCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGcc < 2:401274/139‑1 (MQ=255) aGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGtaaataaa < 5:254046/138‑1 (MQ=255) aGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGTAAATAAAg > 5:410769/1‑139 (MQ=255) gCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTTCCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGTAAATAAAGTGaaa > 1:212749/1‑138 (MQ=255) gCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGata > 1:237376/1‑90 (MQ=255) gCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGata < 2:237376/90‑1 (MQ=255) gCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGTAAATAAAGTGaaa > 5:302959/1‑138 (MQ=255) gCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGTAAATAAAGTGaaa > 5:151005/1‑138 (MQ=255) gCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGGAAATAAAGTGaaa > 7:56369/1‑138 (MQ=255) | CAGCCCGGAAATGATAAAGCTGACAAAATCAAGAATAATGGCGCCTTCAATACCGATTGTGTTGTACATAAACGCGCCTATGCCGACTCCAAACACCATAAAAATGCTAAAAAGCATCTGATTAAGCCCTGCCGCTTTCGCATAATGCTCCTTCGGCAGAATGGCTTGTACCAAACTGTTTTCTGCCGGAAAGAAAAACTTTGTTACAGCGCTTCTGATAAATAAGATACAAAAAACAAGAGGAATATTGCCGGTAAATAAAGTGAAA > CP006881/1438941‑1439208 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |