Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 3,476,692 | G→T | 31.6% | H19N (CAT→AAT) | U712_17855 ← | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 3,476,692 | 0 | G | T | 31.6% | 53.6 / 9.0 | 50 | H19N (CAT→AAT) | U712_17855 | putative undecaprenyl‑phosphate galactose phosphotransferase‑like Protein |
Reads supporting (aligned to +/- strand): ref base G (24/9); new base T (5/11); total (30/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.18e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTCTCCAAACAAATCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAGCAGACGGATGTTAATTGGATGTAAA > CP006881/3476555‑3476829 | cGTCTCCAAACAAATCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGt < 1:181802/139‑1 (MQ=255) tcCAAACAAATCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATTTAAAAGAATGTAttt > 7:421263/1‑139 (MQ=255) tcCAAACAAATCAAAATTGAAAATACCGCAAACATTGGCAGCGCAATAGCCAATCCAATGAGCGCAAACCAAAAATCCATTACGCGCTTTAATGCCAAATAACGCGCCGTCTTTTGAGATAAAGTAAAAAAATATtttt > 7:12325/1‑139 (MQ=255) aaacaaaTCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATttgtt < 5:422761/139‑1 (MQ=255) aaTCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGATTGTATTTGTTGAACt < 6:69166/139‑1 (MQ=255) aTCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGCGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTg > 6:75180/1‑139 (MQ=255) aTCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTGGTTTGAGATTATGTAAAAGAATGTATTTGTTTATCTg > 7:174828/1‑139 (MQ=255) aaaaTTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTg > 4:407766/1‑136 (MQ=255) aaaaTTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAAAAAGTATTTGTTGAAcat > 4:384805/1‑134 (MQ=255) aaaaTTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCGTTTCAGATAATGTTAAAGAATGTATTTTTTGAACTg > 4:428604/1‑136 (MQ=255) aaaaTTGAAAATACCGCAATCATTGGCAGCGAAATCGCCAATCCAAAGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGACGTCGTTTCAGATAATTTATAAGAATTTATTTTTTGTACTg > 3:278114/1‑136 (MQ=255) cGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAAATGAGAATTCACGACTcac > 1:58987/1‑138 (MQ=255) aaTCATTGGCAGCGCAATCGCCAATCAAATGAGCCAAAACCAAATTTCAATTCCGCGATTATTTGACAAATCACGAGCCGTTTTTTCATATAATTTAATATATTTTTTTTTTTGAACTGACATTTCACGACTCACATTc < 2:58987/139‑1 (MQ=255) cgcAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTGGTTTGAGATAATTTTAAATAATTTTTTTGTTGAAATGTGAATTGAAGACTCACAGTAATGCTGTTatct > 5:239144/1‑139 (MQ=255) cgcAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGTACTGAGAATTCCCGCCTCACATTCATGCTTTtctcg > 5:204675/1‑138 (MQ=255) cAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTGTTTTCAGATTATGTAAAAGAATGTATTTGTTGAACTGAGGATTCACGCCTCACGTTAATGCTTTTCTCTGc > 1:48335/1‑139 (MQ=255) cAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTGGTTTAAGATAATTTTAAAAAATTTATTTTTTTTACTGAGAATTAAAGACTCACATTCATGCATTTCTCTgg > 2:292437/1‑138 (MQ=255) cGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAAAGGAAAAGAATTTTTTTTTTGTACTGAGAATTCAAGTCTAACATTGAAGCTTTTTTCTGgact > 7:325969/1‑138 (MQ=255) caaatccaatGAGCGAAAACCAAATATCAATTACGCGATTTATTGCCAAATAACGAGCCGTATTTTCATATAATGTAAAAGAATTTATTTGTTTAACTGACAATTCACGACTCACATTCATGCTTTTCTCTGcactcac < 8:421263/137‑1 (MQ=255) tccaatGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGGTGTACTGAGAATTAACGCCTCACATTCATGGGTTTCTCTGCACTCACGGac > 1:48161/1‑139 (MQ=255) aatGAGCCCAAAACAAATATCCATTACGCGCTTTATTGCCAAAAAACGAGCCGTCTTTTCAGATAATGTAAAAGATTGTATTTTTTCAACTGAGAATCCACGACTCACATTCATGCTTTTCTCTGCACTCACTGacaca < 7:392375/139‑1 (MQ=255) acccaaaaCAAAATATCCATTACGCGTTTTATTGCAAAATAACGCGCCGTATTTTAATATAATCTAAAAGAATTTTTTTGTTGAACTTATAATCCACGACTCACATTCATGCTTTTCTCTGCACTCACTGacacacac < 6:326786/133‑1 (MQ=255) aGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACAcc > 7:254858/1‑139 (MQ=255) aCCAAATCACCATTACGCGCTTTATTGCAAAATAACGCGCCTTCTTTTAATATAATTTAAAAGATTGTTTTTGTTCAACTGACACTCCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGAt < 2:344435/139‑1 (MQ=255) atatCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCGTTTCAGATAATGTAAAAGAATGTTTTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCCCTCACTGACACACACCTCACGAtttgtt > 5:99678/1‑139 (MQ=255) tCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCATATAATGTAAAAGAATGTATTTGTTGAACTCAGAATTCACGACTCACATAAATGCTTTTCTCTGCACTCACTGACACACACCACACGAattgtt > 3:421400/1‑136 (MQ=255) aTTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTAACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACCAGTTGTTTGGGAt > 5:81232/1‑139 (MQ=255) ttccgcgTTTTATTCCAAAATAACCCCCCGTCTTTTCATATAATCAAAAACATTTTTTTTGTTCAACTGAAAATCCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTggg < 3:269652/133‑1 (MQ=255) ttACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATg > 2:55772/1‑139 (MQ=255) ttACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCACGACGCCCATTCATGCTTTTCTCTGCACTCACTGCCACACCCCTCACGATTTGTTTGGGATg > 5:84165/1‑139 (MQ=255) cgcTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCCCGACTCACATTCATGCTTTTCTCTGCCCTCACTGACACACACCTCACGATTTGTTTGGGATGTTat > 6:403588/1‑138 (MQ=255) cgattaaTTGCCAAATACCGAGCCTTCTTTTCATATAATGTAAAATATTTTATTTGTTTAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTatg < 6:84165/133‑1 (MQ=255) gcTTTATTCCCAAATACCGCCCCGTCTTATCAGATAATGAAAACTAATTTATTTTTTCACCTGTCAATGCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTatga < 5:75180/139‑1 (MQ=255) gcTTTATTCCCAAATAACGAGCCGTCTTTTCAGATAATGAAAAAGTATGTATTTGTTGAACTGATAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTatga < 6:68804/139‑1 (MQ=255) gcTTTATTCCAAAATAACGAGCCTTATTTTCATATATTTAAAAATAATTTTTTTTTTGAACTTATAATCCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTa < 3:384805/136‑1 (MQ=255) gcTTTATGGCCAAAAAACGAGCCGTCTTTTCAGATAATGTAAAACAATTTATTTGTTCAACTGACAATGCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTa < 4:403912/136‑1 (MQ=255) tatcccAAATAACGAGCCGGATTTGAAGATAATGTAAAATAATTTTTTTGTTGACCTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGAc < 6:427617/134‑1 (MQ=255) aaTAACGAGCCGTGTTTTAAGATAATTTAAAATAATTTATTTTTTGAACTGAGAATTAACGCCTCACATTAAATCTTTTCTCTGCACTCACTGACACACACCACACGATTTGTTTGGGATGTTTTGATTACCTATTCca > 8:168088/1‑139 (MQ=255) aaTAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCACGACGAACATTCATGCTTTTCTCTGCAATCACTGACACACACCTCACGATTTGTTTGGGATTTTTTGATGAACTATGCca > 6:324959/1‑139 (MQ=255) aaTAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTAACGACTCACATTCATGCTTTTGTCTGCACTCACTGACACACCCCTCACGATTTGTTTGGGATGTTATGATTACCTATGccc > 6:395923/1‑138 (MQ=255) aaCGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCACGACTCACATTAATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGccc > 3:403912/1‑135 (MQ=255) aaCGAGCCGTCGTTTCTGATAATGTTAAAGAATGTATTTGTTGAACAGAGAATTACCGACTCCCAGTCATGGTGTTCTATGCCCTCACAGACACCCACCGCACCAGTTGTTTTGGCTGTTTTGATGACCTAAGccc > 4:324103/1‑135 (MQ=255) cttCTTTTCATAAAAAGAAAACTAATTTTTTTGTTGACCTCACAACACACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAg < 2:48335/137‑1 (MQ=255) taataaaaTGTAAAAGAATGTATTTGTTTAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAGCAg < 3:418598/129‑1 (MQ=255) tCAGAAAACGAACAAAAATGAATTGGTTGAACTACAAATCCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAGCAGACg < 8:14058/138‑1 (MQ=255) taaTTTATTTGTTGAACTGTGAATCCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAGCAGACGGATGTTAATTGGATGt < 8:174828/138‑1 (MQ=255) tGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAGCAGACGGATGTTAATTGGATGTaaa > 5:335742/1‑139 (MQ=255) tGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAGCAGACGGATGTTAATTGGATGTaaa > 8:142817/1‑139 (MQ=255) tGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTAAGATGACCTATGCcagt > 1:108619/1‑106 (MQ=255) tGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTAAGATGACCTATGCcagt < 2:108619/106‑1 (MQ=255) | CGTCTCCAAACAAATCAAAATTGAAAATACCGCAATCATTGGCAGCGCAATCGCCAATCCAATGAGCGCAAACCAAATATCCATTACGCGCTTTATTGCCAAATAACGAGCCGTCTTTTCAGATAATGTAAAAGAATGTATTTGTTGAACTGAGAATTCACGACTCACATTCATGCTTTTCTCTGCACTCACTGACACACACCTCACGATTTGTTTGGGATGTTATGATGACCTATGCCAGTCAGTTTAGCAGACGGATGTTAATTGGATGTAAA > CP006881/3476555‑3476829 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |