| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,647,985 | A→C | 11.6% | intergenic (‑386/+11) | U712_18790 ← / ← U712_18795 | Nitrate reductase alpha chain/putative transcription regulator ArfM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,647,985 | 0 | A | C | 11.6% | 177.3 / 3.2 | 78 | intergenic (‑386/+11) | U712_18790/U712_18795 | Nitrate reductase alpha chain/putative transcription regulator ArfM |
| Reads supporting (aligned to +/- strand): ref base A (52/16); new base C (3/7); total (55/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.73e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACAGCGTGTTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCGGATGATAAGACA > CP006881/3647851‑3648123 | gaCAGCGTGTTTCCTTGTGAACTATGTCACACCCTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCgg > 7:33860/1‑139 (MQ=255)gaCAGCGTGTTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCgg > 1:155736/1‑139 (MQ=255)gaCAGCGTGTTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTAGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCgg > 8:115767/1‑139 (MQ=255)gaCAGCGTGTTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTAGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCgg > 8:109765/1‑139 (MQ=255) cGTGTTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTa > 6:26792/1‑139 (MQ=255) cGTGTTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTa > 7:26045/1‑139 (MQ=255) tgtTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAAACGGctc > 4:341627/1‑135 (MQ=255) tCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTAttt > 5:34873/1‑136 (MQ=255) ccTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTAttt > 4:297034/1‑135 (MQ=255) tgtgAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAAcc > 7:250553/1‑139 (MQ=255) aatttGTCACACACTGTGCTTTTTTAACAAAATTTTCACACAAAGGAGACGGAAGGCGGCGTTCAGGCAGGACGCGTGGGTCATTAGCTGCCTTACATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCt < 8:232241/135‑1 (MQ=255) aTGCCACACACTTGGTTTTTTACACAAACTGTACCCAAAACGGACTCGGACGGCTGCGTGCTGCCAGGACGCTGGGGTATTTCGCGCCCTTAAATTAAAAAAACAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAg < 2:155736/139‑1 (MQ=255) tGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGc > 7:32832/1‑139 (MQ=255) tGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGc > 7:232241/1‑139 (MQ=255) tGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGc > 1:54192/1‑139 (MQ=255) tGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAAACGGGCTCAGc > 1:410919/1‑139 (MQ=255) tGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTAGTTAAGAACCGGGCTCAGc > 1:91383/1‑139 (MQ=255) tGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTAAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAg < 8:250553/138‑1 (MQ=255) cacacaCTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGtt > 6:96176/1‑139 (MQ=255) aaacacTCTGATTTTTACACAAAATTTTCACACAAAGGATAAGGAAGGCGGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTAATACAAAGATCAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGttt < 6:132141/137‑1 (MQ=255) acacTCTGCTTTTTTCACAAAATGTTCACACAACGGAGACGGACGGCGGCGTTCCGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGAACAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTc < 8:33860/139‑1 (MQ=255) acTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCAt > 5:132141/1‑139 (MQ=255) tctGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTAAGCGTTTTCATcc > 7:272472/1‑139 (MQ=255) tctGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGATCAGCGTTTTCATcc > 2:55491/1‑139 (MQ=255) tGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGGTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACAGGCTCTATTTAAGAACCGGGCTCAGCGTTGACATCCtg > 8:230836/1‑139 (MQ=255) tGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCtg > 1:37383/1‑139 (MQ=255) tGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCtg > 2:156759/1‑139 (MQ=255) tGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCtg > 8:24813/1‑139 (MQ=255) tGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCAGTAGCTGCCTTTCATTCAAAGATCAAAAAAAACAGGCTCTATTTAAGAACCGGGCTCAGAGTTTTCATCCtg > 5:340395/1‑139 (MQ=255) tttttttCACAAAATGTTAAAACAAAGGAGAAGGAAGGCTGCTTTCAGGCAGGACGCTTGGTTCATTAGCTGCCTTTAATTAAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCAt < 3:297034/132‑1 (MQ=255) cTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGCACCGGGCTCAGCGTTTTCATCCtgtg > 2:213320/1‑139 (MQ=255) cTTTTATCACAAAATTTACACACAAAGTAAAAGCCCGGCGGCGTCCCGGCAGGACGTTTGGGGCATTCGCTGCCTTTCATTAAAAGATCAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCtgt < 5:268534/138‑1 (MQ=255) ttttttCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCATGCAGGACGCTTGGGTCATTAGCTGCCTTTCTTTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCtg > 3:206194/1‑136 (MQ=255) ttttttCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCtg > 3:279586/1‑136 (MQ=255) tttttCACAAAATGTACCAAAAACGGAGCAGCAAGGCGCCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTATCATTAAAACATAAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGa < 2:384624/138‑1 (MQ=255) ttttCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCtgtg > 4:340544/1‑136 (MQ=255) ttttCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTAGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGa < 7:109765/137‑1 (MQ=255) ttttCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTAGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGa < 7:115767/137‑1 (MQ=255) caAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGCACCGGGCGCAGCGTTGTCTTCCTGTGCTGTAt > 4:246886/1‑136 (MQ=255) caAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGATCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTAt > 3:166974/1‑136 (MQ=255) caAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTGTCAGTCAAAGGTCAAAAAAAACCGGGTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTAt > 4:241404/1‑136 (MQ=255) aaaaTGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATg > 1:295193/1‑136 (MQ=255) aaaaTGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAA‑CGGCTATAATTAAGAACCGGGCTCAGGGTTTTCATACGTTTATGTATGctgt > 8:331164/1‑136 (MQ=255) tccggCTGCTTTCAGGATGGACTGTTGGGGAATTAGCTGACTTTCATTAAATGTTAAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAg < 5:224294/135‑1 (MQ=255) gaaggCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGa > 3:147971/1‑135 (MQ=255) aggCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGaa > 8:42769/1‑139 (MQ=255) aggCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGaa > 6:1051/1‑139 (MQ=255) gCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAAc > 5:414154/1‑138 (MQ=255) cTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGaa > 4:186442/1‑136 (MQ=255) gCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAAc > 3:54478/1‑135 (MQ=255) gCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAAc > 4:422596/1‑135 (MQ=255) gCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACaaa > 7:367026/1‑138 (MQ=255) cGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACaaaa > 8:359900/1‑138 (MQ=255) ttCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACaaaaaa > 6:352861/1‑138 (MQ=255) ttCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACaaaaaa > 7:326967/1‑138 (MQ=255) ttCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACaaa > 3:409674/1‑135 (MQ=255) cgcggccggACGTTTGGTTAATTATCTGCATTAAATTAAAACATAAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACaaaaa < 4:54478/133‑1 (MQ=255) aggcaggACGATTGGGTAATTAGCGCCATTTCAATCAAACATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACAtt < 8:220130/139‑1 (MQ=255) ggACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCt > 8:97811/1‑139 (MQ=255) gCTTGGGTAATTAGCTGACTTTAATTCAAATATCAAAAAAAACCGGCTCTATTTAAGAACAGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAg < 8:26045/139‑1 (MQ=255) tGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGTCTCAGCGTTTTCATCCTGTGATGTATGCTGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCa > 6:165292/1‑138 (MQ=255) tGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGACACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCa > 8:250137/1‑138 (MQ=255) tGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGACACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCa > 8:243949/1‑138 (MQ=255) ggTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCa > 3:111456/1‑136 (MQ=255) tCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCCTCCTGTGTTGTATGCGGATCCCGCAAAAATAATTGATAGGAACAAAAATCATTTTGCTGAAGCATAGc > 5:191441/1‑138 (MQ=255) ccATTAGCTGACTTTCATAAAAATATCAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATa < 4:206194/135‑1 (MQ=255) aTTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCa > 7:409599/1‑138 (MQ=255) taaGCTGCCTTTCATTAAAAGAAAAAAAAAACCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGcc < 4:409674/134‑1 (MQ=255) ccTTTCATTCAAAGATCAAAAAAAAACGGCTCTATTTAAGAACCGGGCTCAGAGTTTTCATCATGTGATGTATGAAGATACAGCAAAAATAAATGATAGGAACAAAAAACATTTTGATGAAGAATAGCAAAAAAGTTCa > 8:23978/1‑139 (MQ=255) ccTTTCATTCAAAGATC‑AAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCAt > 6:91026/1‑139 (MQ=255) tcattcaAATATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCAtt < 8:65487/137‑1 (MQ=255) cattcaAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGc < 2:37383/139‑1 (MQ=255) cattcaAACATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTg < 2:354719/138‑1 (MQ=255) aaaTATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTg < 7:55428/139‑1 (MQ=255) aaaTATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTg < 7:422483/139‑1 (MQ=255) aaaGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTATCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTg < 8:367026/139‑1 (MQ=255) ccacaaaaaaaacCCGGCTATATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCg < 2:291892/134‑1 (MQ=255) agttaaaaaaaaaCCGGCTCTATTTAAGAACCGGGCTCAGAGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCg < 7:23978/134‑1 (MQ=255) aGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCt < 3:340544/136‑1 (MQ=255) tCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCg > 3:133665/1‑136 (MQ=255) aaaCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGACACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCGGATGATAAGa < 7:250137/139‑1 (MQ=255) aaaCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGACACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCGGATGATAAGa < 7:243949/139‑1 (MQ=255) aCCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCGGATGATAAGAca > 7:66365/1‑139 (MQ=255) | GACAGCGTGTTTCCTTGTGAACTATGTCACACACTCTGCTTTTTTCACAAAATGTTCACACAAAGGAGAAGGAAGGCTGCGTTCAGGCAGGACGCTTGGGTCATTAGCTGCCTTTCATTCAAAGATCAAAAAAAACCGGCTCTATTTAAGAACCGGGCTCAGCGTTTTCATCCTGTGATGTATGCAGATACCGCAAAAATAATTGATAGGAACAAAAAACATTTTGCTGAAGCATAGCCAAAAAGTTCATTTGCAGCTGCGGATGATAAGACA > CP006881/3647851‑3648123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |