Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 269,476 | T→C | 6.6% | V209A (GTG→GCG) | U712_01260 → | putative aldehyde dehydrogenase ycbD |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 269,476 | 0 | T | C | 6.6% | 183.0 / 4.0 | 61 | V209A (GTG→GCG) | U712_01260 | putative aldehyde dehydrogenase ycbD |
Reads supporting (aligned to +/- strand): ref base T (32/25); new base C (2/2); total (34/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 |
AAATGGCGCCGGCATTGGTATACGGCAATACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAGGGGAGCCAAATATCAGCTT > CP006881/269347‑269612 | aaaTGGCGCCGGCATTGGTATACGGCAATACCGTTCTCCTCAACCCGGCGACAGAAACAGCTGTGACATGCGCCCAGCTCATTGCCTCCTTTGAGGCCGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGccc < 4:246577/139‑1 (MQ=255) tGGCGCCGGCATTGGTATACGGCAATACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCggg < 4:318189/139‑1 (MQ=255) cGGCAATACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAgggg > 4:274080/1‑139 (MQ=255) cGGCAATACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAgggg > 7:320403/1‑139 (MQ=255) ggCAATTCCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGATGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGCCAGGCCCGGGTTCTGTTGTCGGGCTGGGGc > 8:297140/1‑139 (MQ=255) ggCAATACCGTTGTCATAAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGc > 5:185332/1‑139 (MQ=255) cAATACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCTCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACCGGCCCGGGTGCTGTTGTCGGGCAGGGGCtg > 2:273475/1‑138 (MQ=255) aaaTACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTCCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTAGGTGACAGGACCGGGTTCTGTTGTCGGGCAGGGGCtt > 6:347388/2‑139 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTg < 4:255421/137‑1 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTg > 3:255421/1‑137 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCt > 7:299714/1‑139 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCt > 5:133396/1‑139 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCt > 4:205397/1‑139 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCt > 2:43640/1‑139 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCt > 2:246934/1‑139 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGCGACAGGCCCGGGTTCTGTTGTCGGGc < 5:224212/128‑1 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGCGACAGGCCCGGGTTCTGTTGTCGGGc < 5:219371/128‑1 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGCGACAGGCCCGGGTTCTGTTGTCGGGc > 6:224212/1‑128 (MQ=255) tACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGCGACAGGCCCGGGTTCTGTTGTCGGGc > 6:219371/1‑128 (MQ=255) ttGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCa > 3:281327/1‑139 (MQ=255) ttGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCa > 6:61835/1‑139 (MQ=255) ttGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCa > 8:108933/1‑139 (MQ=255) ttGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCa > 1:271546/1‑139 (MQ=255) ttGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCACGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCa > 8:98994/1‑139 (MQ=255) tcatcaAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGa < 4:281327/139‑1 (MQ=255) atcaAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTTCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGAc < 7:108933/138‑1 (MQ=255) atcaAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTg < 7:112178/127‑1 (MQ=255) atcaAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGAc > 7:216188/1‑138 (MQ=255) atcaAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGAc < 3:205397/138‑1 (MQ=255) atcaAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGAc < 8:216188/138‑1 (MQ=255) atcaAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGCGCTTg > 8:112178/1‑127 (MQ=255) atcaAACCCGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGTGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGATGTCGGGCAGGGGCTTGCTGAGCATGACg < 5:292262/139‑1 (MQ=255) aCCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTa < 3:274080/139‑1 (MQ=255) cGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTaaa < 2:271546/139‑1 (MQ=255) cTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTAc < 1:21240/139‑1 (MQ=255) cTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTAc < 5:61835/139‑1 (MQ=255) cTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTAc < 1:43640/139‑1 (MQ=255) gtgACATGCGCGAAGATCATTGCCTGCTTTTAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCa > 6:151486/1‑95 (MQ=255) gtgACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCa < 5:151486/95‑1 (MQ=255) aCATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGt > 7:333917/1‑138 (MQ=255) tGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTAc < 8:19833/131‑1 (MQ=255) tGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTAc > 7:19833/1‑131 (MQ=255) cgcgAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGTCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAAt > 5:280310/1‑139 (MQ=255) cgcgAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAAt > 6:297650/1‑139 (MQ=255) cgcgAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACAGGTTCAAAt > 7:182357/1‑139 (MQ=255) gCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAatcat > 8:87248/1‑139 (MQ=255) gCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAatcat > 2:48921/1‑139 (MQ=255) gAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAg < 8:299714/139‑1 (MQ=255) gAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAg < 8:333917/139‑1 (MQ=255) gAAGCGGGGCTCCCGGCAGGGGGCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAg < 3:331431/139‑1 (MQ=255) gCGGGGCTCCCGGCAGGGGTCATCAAATTGTTGACAGGCCCGGGGTCTGTTGTCGGGCATGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAACTCAAGTCGGAAAAATCATCGTGCAAGCCg > 7:122845/1‑139 (MQ=255) ggggCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCt < 1:25975/139‑1 (MQ=255) gctggggTCATCAATTTGGTTACAGGCCCGGGTGCTGTTGTCGGGCAGGGGATTGCTTAGCATGACGGAGTAAACGCCGTTACGTTTACCTGTTCAAATCAAGTCGGTAAAATCATCGGGCAAGCCGCTTTAGCGAggg < 5:347388/136‑1 (MQ=255) gCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAggg < 7:87248/139‑1 (MQ=255) gCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAggg < 1:48921/139‑1 (MQ=255) tcatcaATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAGGGGAGCCa > 1:238689/1‑138 (MQ=255) atcaATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAg < 7:343470/115‑1 (MQ=255) atcaATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAg > 8:343470/1‑115 (MQ=255) atcaATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAGGGGAGCCaaa > 5:46223/1‑138 (MQ=255) tcaATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACAGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAGGGGAGCCAAata > 5:343822/1‑139 (MQ=255) aaTTTGGTGACAGGCCCGGGTTCTGGTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAGGGGAGCCAAatat < 2:352164/138‑1 (MQ=255) tGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAGGGGAGCCAAATATCAGCtt > 1:178628/1‑137 (MQ=255) | AAATGGCGCCGGCATTGGTATACGGCAATACCGTTGTCATCAAACCGGCGACAGAAACAGCTGTGACATGCGCGAAGATCATTGCCTGCTTTGAGGAAGCGGGGCTCCCGGCAGGGGTCATCAATTTGGTGACAGGCCCGGGTTCTGTTGTCGGGCAGGGGCTTGCTGAGCATGACGGTGTAAACGCCGTTACGTTTACCGGTTCAAATCAAGTCGGAAAAATCATCGGGCAAGCCGCTTTAGCGAGGGGAGCCAAATATCAGCTT > CP006881/269347‑269612 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |