| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,723,771 | C→T | 100% | F195F (TTC→TTT) | U712_19195 → | putative transporter ywcJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,723,771 | 0 | C | T | 100.0% | 307.9 / NA | 91 | F195F (TTC→TTT) | U712_19195 | putative transporter ywcJ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (43/48); total (43/48) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTT‑CCGGCTTCGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGAC > CP006881/3723635‑3723902 | aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 6:327895/1‑139 (MQ=255)aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 7:98969/1‑139 (MQ=255)aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 2:115600/1‑139 (MQ=255)aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 1:274363/1‑139 (MQ=255)aGCCGCCGGCTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTAt > 1:212263/1‑139 (MQ=255) cgccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑c < 2:215558/139‑1 (MQ=255) cgccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑c < 4:41654/139‑1 (MQ=255) cgccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑c < 1:240507/139‑1 (MQ=255) ccggcTTCCGAATTGTTTTTCAGAGGTATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCg > 1:40822/4‑139 (MQ=255) ccggcTTCCGAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCg > 7:329034/4‑139 (MQ=255) cgtattGTTTTTCAGAGGAATGCTGTGCTATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGaa < 2:178764/134‑1 (MQ=255) gAATTGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAac < 1:115600/139‑1 (MQ=255) aattGTTTTTCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAaca < 3:27975/136‑1 (MQ=255) tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCa < 7:15614/139‑1 (MQ=255) tttttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCa < 4:216702/139‑1 (MQ=255) ttCAGAGGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAATGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTg > 2:50021/1‑139 (MQ=255) agagGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGcc < 3:313027/138‑1 (MQ=255) agagGAATACTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGcc < 1:204283/138‑1 (MQ=255) agGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGGACACAGCATTGCCaa > 4:110578/1‑138 (MQ=255) agGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCaa > 4:266485/1‑138 (MQ=255) agGAATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAat < 3:37617/139‑1 (MQ=255) tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑GCGGAGTTGAACACAGCATTGCCATTATGTGCACAt > 2:186035/1‑139 (MQ=255) tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAat < 6:289280/129‑1 (MQ=255) tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAat > 5:289280/1‑129 (MQ=255) tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACAt > 8:66135/1‑139 (MQ=255) tgCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACAt > 3:16170/1‑139 (MQ=255) cAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTc > 2:94646/1‑139 (MQ=255) cAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTc > 4:315121/1‑139 (MQ=255) ttGGCTTGTGTGCCTCGCCTTTATCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTGTTTATTT‑CCGGCTTTGAACACAGCCTAGCCAAAATGTGCACATTCGc > 1:166098/1‑138 (MQ=255) ggCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCa > 4:244233/1‑138 (MQ=255) ggCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCAt > 3:288291/1‑139 (MQ=255) ggCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCAt > 8:210713/1‑139 (MQ=255) ggCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCAt > 8:224193/1‑139 (MQ=255) gCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCAtc < 2:201218/139‑1 (MQ=255) gCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCAtc < 2:206305/139‑1 (MQ=255) ttGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCAtctc > 7:170053/1‑139 (MQ=255) tgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCt > 7:197955/1‑139 (MQ=255) tgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCt > 3:44532/1‑139 (MQ=255) tgtgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCt < 3:146612/139‑1 (MQ=255) tgCCTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCtgt > 1:262357/1‑137 (MQ=255) ccTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCtttt > 3:330884/1‑138 (MQ=255) ccTCGCCTTTTTCATTACAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTg > 2:102613/1‑139 (MQ=255) cTCGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCttttca > 7:206197/1‑137 (MQ=255) cGCCTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATc > 4:57747/1‑139 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTCCCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 6:1263/139‑1 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCTAg < 8:197955/139‑1 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 7:289463/139‑1 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 4:309474/139‑1 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 7:66135/139‑1 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:319873/139‑1 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:244233/139‑1 (MQ=255) cTTTTTCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg > 3:162266/1‑139 (MQ=255) ttttATTCCATAGTCTCTACAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCCTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa < 2:166098/138‑1 (MQ=255) tttCATTCCAATGTCTCTCAAATGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTTCACATTCGCCATCTCGCTTTTGATCGAGCa < 8:37898/138‑1 (MQ=255) tttCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa < 1:183931/138‑1 (MQ=255) tCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAcc < 7:224193/138‑1 (MQ=255) tCATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGGTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAcc < 4:212842/138‑1 (MQ=255) cATTCCAATGTCTCTCAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCAccc < 3:199486/138‑1 (MQ=255) tctctcAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTg < 8:329034/138‑1 (MQ=255) tctctcAAAGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGa < 4:16170/139‑1 (MQ=255) ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 3:92276/117‑1 (MQ=255) ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg > 4:92276/4‑120 (MQ=255) ctcaaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACac > 4:124791/4‑138 (MQ=255) aaaGTGGAAGGAGCATAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATAT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGACATCTCGCGTTTGATCGAGCACCCTGATACAGTGACactga < 6:195276/139‑5 (MQ=255) aaaGGGGAAGGAGCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACactga < 4:330884/139‑5 (MQ=255) gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACa > 2:10932/1‑129 (MQ=255) gaaggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACa < 1:10932/129‑1 (MQ=255) gaaggagCAAAGCTTTTTACCATGATGCTTTTCGGTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg < 5:327895/139‑1 (MQ=255) aacgagCAAAGCATGTTACCATGATGCTTTTCGGTTTCTGGTTCCATATTTCCCGGCTT‑GAACGCAGCTTATACAATATGTGCACATTCTCCATCTAGATTTTTATATACAATCATGAAACAGTGACACAGATGGGAg < 6:155184/133‑1 (MQ=255) aggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg > 2:357726/1‑109 (MQ=255) aggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAg < 1:357726/109‑1 (MQ=255) aggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg > 1:237504/1‑137 (MQ=255) aggagCAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAg > 5:224030/1‑137 (MQ=255) cAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGt > 6:23425/1‑136 (MQ=255) cAAAGCTTTTTACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAg < 3:315121/139‑1 (MQ=255) ctttttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACt > 7:348824/4‑139 (MQ=255) tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa > 7:70255/1‑98 (MQ=255) tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCa < 8:70255/98‑1 (MQ=255) tttACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTaa > 7:52083/1‑139 (MQ=255) tACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAAt < 3:57747/138‑1 (MQ=255) tACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAAt < 8:348824/138‑1 (MQ=255) tACCATGATGCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAAt < 2:212263/138‑1 (MQ=255) tgatgCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAg < 6:80414/102‑1 (MQ=255) tgatgCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAg > 5:80414/1‑102 (MQ=255) tgatgCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGt > 7:54181/1‑139 (MQ=255) tgatgCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCATGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGt > 5:62471/1‑139 (MQ=255) tgCTTTTCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTac < 1:108526/139‑1 (MQ=255) ttCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCTCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTc < 6:224030/138‑1 (MQ=255) ttCGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTc < 2:237504/138‑1 (MQ=255) cGTTTTCTGCTTCTTTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCgg < 4:162266/138‑1 (MQ=255) cttcttTATTT‑CCGGCTTTGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCGCTTTTGATCGAGCACCCTGATACAGTGACACTGATGGGAGCAGTCAGAAACTTAATCCCCGTTACGCTCGGCAATCTGAc < 8:98969/138‑1 (MQ=255) | AGCCGCCCGCTTCCGAACTGTTTTTCAGAGGGATGCTGTGCAATTGGCTTGTGTGCCTCGCCTTTTTCATTCCAATGTCTCTTAAAGGGGAAGGGGCAAAGCTCTTTACCATGATGCTTTTCGTTTTCTGCTTCTTCATTT‑CCGGCTTCGAACACAGCATTGCCAATATGTGCACATTCGCCATCTCACTTTTGATCGAGCACCCTGATACAGTGACAGTAATGGGAGCAGTCAGAAACTTAATTCCCGTTACACTCGGCAACCTGAC > CP006881/3723635‑3723902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |