| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 62,485 | C→T | 6.1% | Q686* (CAG→TAG) | U712_00285 → | Transcription‑repair‑coupling factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 62,485 | 0 | C | T | 6.1% | 267.3 / 4.2 | 82 | Q686* (CAG→TAG) | U712_00285 | Transcription‑repair‑coupling factor |
| Reads supporting (aligned to +/- strand): ref base C (36/40); new base T (2/3); total (38/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
AGAACGTCCGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGTTGATATCGTCATCG > CP006881/62352‑62623 | agaACGTCCGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCAcagcag < 6:91313/139‑1 (MQ=255)agaACGTCCGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCAcagcag < 8:268680/139‑1 (MQ=255) gaACGTCCGATGGAGCGCTTGCTGTTCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATAGGTGCCGCGTTTTAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCAcagcag < 4:282707/138‑1 (MQ=255) aaCGTCCGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAgcagca > 3:267536/1‑139 (MQ=255) cGTCCGATTGACCGCTTGCTTTGCGGATATGTTGGCTACGGTAAAACAGAGGTTGCCATACTTGCCGCGTTTAAGGCTATCGGGGACGGAAAGCAGGTAGCTCTGCTCGTTCCTACAACCATTTTGGCACAGCAGCAc > 7:258778/1‑138 (MQ=255) cGTCCGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCAc > 6:298593/1‑138 (MQ=255) gTCCGATGTTCCGCTTTCTGTGCGGAGATTATTGGTAATGAAAAACAGATGTAGCCATACGTGCCGCTTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCTTTCAGACAAACATTTAGGACCAGCAGCACt > 8:58374/1‑138 (MQ=255) cgctGGACCGCTTGCGGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa < 5:217488/136‑1 (MQ=255) cGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCATAGCAGCACTATGa < 7:223372/139‑1 (MQ=255) cGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa < 5:365016/139‑1 (MQ=255) cGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa < 7:137239/139‑1 (MQ=255) cGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa < 4:183151/139‑1 (MQ=255) cGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa < 2:309568/139‑1 (MQ=255) ggACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGCTCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAAc > 8:289943/1‑138 (MQ=255) cTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATaa > 5:192178/1‑137 (MQ=255) tGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAaga > 2:327140/1‑139 (MQ=255) tGCTGTGCGGAGAGGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGGGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAaga < 2:336350/139‑1 (MQ=255) ggggggCGGATTTGGGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGTTGACGTAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAagag < 4:267536/134‑1 (MQ=255) gcggggCGGAGAGGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCGCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAagag < 8:160778/134‑1 (MQ=255) gCTGTGCGGTGATGTGGGCTCCGGTACACCAGAGGGTGCCATCCGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAagcg < 4:78515/139‑3 (MQ=255) gCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCAcagcag < 1:251130/118‑1 (MQ=255) gCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAagag < 2:243402/139‑1 (MQ=255) gCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCAATTTGGCAcagcag > 2:251130/1‑118 (MQ=255) gCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGAGCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAagag < 6:301067/139‑1 (MQ=255) ctttgCGTAGATTTGGTATACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCTTTCCGAGAACCATTTTGGCACAGCAGCAATATTAAACCATAAAataga < 8:258778/136‑2 (MQ=255) cTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAagag < 1:327140/138‑1 (MQ=255) cTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAgc < 6:297385/139‑1 (MQ=255) cTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAgc < 1:926/139‑1 (MQ=255) cTGTGCGGAGAGGGGGGCTACGGTAAAACAGAGGCTGCCATACGTGCCGCGTTTAAGGCGATCGGTTACGGAAAGCTGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAagag < 6:192897/138‑1 (MQ=255) tgCGGATATGTGGTCTACGGTTAAACAGAGGTTGCCATACGTGCCGCGGTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGAGAACCTTTTTGGCAAAGCAGCAATATGAAACCATAAAATAgcg < 1:281946/137‑1 (MQ=255) cggctaTGTGGGCTACGGTAACACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTc < 1:345745/134‑1 (MQ=255) cGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTc < 5:228253/139‑1 (MQ=255) tgGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTa > 1:64454/1‑139 (MQ=255) gggCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCTGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTAt < 6:81714/139‑1 (MQ=255) gggCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTAt < 3:33928/139‑1 (MQ=255) cGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTc > 2:17052/1‑124 (MQ=255) cGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTc < 1:17052/124‑1 (MQ=255) cGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGAt > 3:72194/1‑138 (MQ=255) cGGAAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGCTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTCGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGAt > 6:149018/1‑138 (MQ=255) aaCAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACCACCAGTTTGGCACAGCAGCACGATGAATCCATAAAAGAGCGCTTCCAGGACTAGCCGAtt > 2:321369/1‑133 (MQ=255) aaCAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACACCCATTTTGGCACAGCAGCACTAGGAAACCATAAAAGAGCGCTTCGAGGACTCTCCGATTAATATc > 2:107091/1‑139 (MQ=255) aaCAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATc > 4:162772/1‑139 (MQ=255) aCAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCg < 3:162772/139‑1 (MQ=255) agGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGa < 7:77069/118‑1 (MQ=255) agGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGa > 8:77069/1‑118 (MQ=255) ggTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCtt < 1:26212/139‑1 (MQ=255) gTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTtc > 1:199157/1‑139 (MQ=255) cATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCGCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTcagc < 3:174050/139‑1 (MQ=255) gCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa < 7:343977/80‑1 (MQ=255) gCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa > 8:343977/1‑80 (MQ=255) tttAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACACCCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAAc > 1:161039/1‑137 (MQ=255) tttAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAgc > 4:91723/1‑88 (MQ=255) tttAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAgc < 3:91723/88‑1 (MQ=255) tttAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAAc > 6:336246/1‑137 (MQ=255) aGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCATAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGaa > 2:221372/1‑138 (MQ=255) aTCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCAcagcag < 8:350430/57‑1 (MQ=255) aTCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCAcagcag > 7:350430/1‑57 (MQ=255) aCGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCATAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGa < 1:221372/139‑1 (MQ=255) cAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCa < 2:201123/139‑1 (MQ=255) cAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCa < 7:289943/139‑1 (MQ=255) gTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAg > 2:63838/1‑139 (MQ=255) gTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAg > 4:60200/1‑139 (MQ=255) tAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa > 8:95333/1‑46 (MQ=255) tAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGa < 7:95333/46‑1 (MQ=255) ctGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTg > 7:359760/1‑138 (MQ=255) tGCTCGTTCCGACAACCATTTTGGCATAGCAGCACTATGAAACCATAAAAGAgc > 7:124949/1‑54 (MQ=255) tGCTCGTTCCGACAACCATTTTGGCATAGCAGCACTATGAAACCATAAAAGAgc < 8:124949/54‑1 (MQ=255) tGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTcagc < 6:254234/92‑1 (MQ=255) tGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTcagc > 5:254234/1‑92 (MQ=255) tGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGa > 6:332834/1‑138 (MQ=255) gCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGaa > 4:24780/1‑138 (MQ=255) cTCGTTCCGACCACCATTTTGGCACAGCAGCACTATGAAACCATAAACGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGaaa > 7:9289/1‑138 (MQ=255) cTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGaaa < 8:25813/40‑1 (MQ=255) cTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGaaa > 7:25813/1‑40 (MQ=255) cTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAgc > 7:284624/1‑52 (MQ=255) cTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAgc < 8:284624/52‑1 (MQ=255) tCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGaaaaa > 1:196576/1‑139 (MQ=255) tCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATgg > 3:295813/1‑138 (MQ=255) tCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATgg > 7:362251/1‑138 (MQ=255) tCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATgg > 6:18725/1‑138 (MQ=255) tCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATgg > 6:189494/1‑138 (MQ=255) ccGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGa < 5:336246/138‑1 (MQ=255) cGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTTATATCGGCCTTCTCAGCAGGTGCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGaa < 4:72194/138‑1 (MQ=255) cGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAAc < 2:199157/139‑1 (MQ=255) gACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACg < 5:18725/139‑1 (MQ=255) cAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGt < 8:359760/139‑1 (MQ=255) aCCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGTTg < 5:189494/139‑1 (MQ=255) ttGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGTTGATATc < 8:362251/138‑1 (MQ=255) gCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGTTGATATCGTCa > 7:143347/1‑139 (MQ=255) cagcagCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGTTGATATCGTCATCg > 1:111442/1‑139 (MQ=255) cagcagCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGTTGATATCGTCATCg > 3:154707/1‑139 (MQ=255) | AGAACGTCCGATGGACCGCTTGCTGTGCGGAGATGTGGGCTACGGTAAAACAGAGGTTGCCATACGTGCCGCGTTTAAGGCGATCGGTGACGGAAAGCAGGTAGCTCTGCTCGTTCCGACAACCATTTTGGCACAGCAGCACTATGAAACCATAAAAGAGCGCTTCCAGGACTATCCGATTAATATCGGCCTTCTCAGCAGGTTCAGAACGAGAAAAGAAGCAAACGAAACAATCAAAGGGCTGAAAAATGGAACGGTTGATATCGTCATCG > CP006881/62352‑62623 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |