Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 3,723,045 T→C intergenic (‑159/‑142) U712_19190 ← / → U712_19195 PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068813,723,0450TC100.0% 318.9 / NA 87intergenic (‑159/‑142)U712_19190/U712_19195PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (34/53);  total (34/53)

CAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑‑T‑GT‑T‑TTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAG  >  CP006881/3722911‑3723177
                                                                                                                                      |                                                                                                                                         
cAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGa                                                                                                                                       <  7:54819/139‑1 (MQ=255)
 aaaaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGAt                                                                                                                                      <  4:289910/139‑1 (MQ=255)
       gACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGtt                                                                                                                                <  6:208535/139‑1 (MQ=255)
           tAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCg                                                                                                                            >  2:147415/1‑139 (MQ=255)
             aaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGt                                                                                                                           >  7:225495/1‑138 (MQ=255)
                  cGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑ta                                                                                                                   >  1:153044/1‑138 (MQ=255)
                        cGAATAAAGGACACAGCGATCCTTTTTCATTTACGGTAATTTTATGTCTTGCCTGCTTTACCAGTCACACTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑T‑At‑t‑tttt                                                                                                          <  2:54118/139‑1 (MQ=255)
                                   cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAg                                                                                                >  3:46556/1‑139 (MQ=255)
                                   cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAg                                                                                                >  5:221343/1‑139 (MQ=255)
                                   cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAg                                                                                                >  4:233187/1‑139 (MQ=255)
                                   cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑T‑At‑t‑tttt                                                                                                          >  5:277155/1‑128 (MQ=255)
                                   cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑T‑At‑t‑tttt                                                                                                          <  6:277155/128‑1 (MQ=255)
                                    acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTTTTCAGATTAAGAATACGCTTTCAACATAAATCATGAGAGCGTTTTCCTCAAC‑‑A‑ATAT‑TTTTAGTTAAATAGt                                                                                               >  6:151499/1‑139 (MQ=255)
                                    acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGt                                                                                               >  3:225003/1‑139 (MQ=255)
                                    acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGt                                                                                               <  4:188448/139‑1 (MQ=255)
                                    acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGt                                                                                               >  1:287162/1‑139 (MQ=255)
                                     caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGtt                                                                                              >  1:129589/1‑139 (MQ=255)
                                      aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGttt                                                                                             >  4:219464/1‑139 (MQ=255)
                                      aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGttt                                                                                             >  3:285146/1‑139 (MQ=255)
                                      aGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGttt                                                                                             >  3:95147/1‑139 (MQ=255)
                                        cGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGAGTTTTCTTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGa                                                                                           >  1:32018/1‑139 (MQ=255)
                                           tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATa                                                                                         >  7:69213/1‑138 (MQ=255)
                                           tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTACGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATa                                                                                         >  2:190473/1‑138 (MQ=255)
                                                tttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAAcat                                                                                   >  6:261084/1‑137 (MQ=255)
                                                 ttCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAAcat                                                                                   <  5:139087/138‑3 (MQ=255)
                                                       tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGAc                                                                             >  4:193470/1‑138 (MQ=255)
                                                              aTTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTc                                                                     >  2:1804/1‑139 (MQ=255)
                                                                  tAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTa                                                                  <  3:14145/138‑1 (MQ=255)
                                                                        ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACTAAAATTCGTaaaaatt                                                            >  3:123168/1‑136 (MQ=255)
                                                                        ttGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTAGTaaaaatt                                                            >  7:202924/1‑136 (MQ=255)
                                                                          tccTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                          <  6:29393/137‑2 (MQ=255)
                                                                          gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                          >  7:147265/1‑138 (MQ=255)
                                                                                  tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                  <  2:153044/138‑1 (MQ=255)
                                                                                    ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  1:103652/138‑3 (MQ=255)
                                                                                    ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  6:9908/138‑3 (MQ=255)
                                                                                    ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  7:220556/138‑3 (MQ=255)
                                                                                    ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  3:50891/138‑3 (MQ=255)
                                                                                    ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  8:225495/138‑3 (MQ=255)
                                                                                    ccAGTCACAATCACTCTTATTCAGATTAAGAATTCGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                <  3:33/138‑3 (MQ=255)
                                                                                        tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           <  6:35137/139‑1 (MQ=255)
                                                                                        tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           <  2:129589/139‑1 (MQ=255)
                                                                                        tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           <  2:287162/139‑1 (MQ=255)
                                                                                        ggacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           <  5:278844/137‑1 (MQ=255)
                                                                                          acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTaaa                                                                                                   <  1:130891/81‑1 (MQ=255)
                                                                                          acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTaaa                                                                                                   >  2:130891/1‑81 (MQ=255)
                                                                                          acaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTcac                                          >  8:68607/1‑138 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTCAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  8:262214/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACTAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  4:123168/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  3:233187/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  8:69213/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  8:284374/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  8:202924/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  7:242722/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  1:147415/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  6:75770/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  6:221343/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  4:95147/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  3:269166/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  4:225003/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  4:260677/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  4:296676/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  3:281535/139‑1 (MQ=255)
                                                                                             aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  5:261084/139‑1 (MQ=255)
                                                                                             aTCCAGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  8:126896/139‑1 (MQ=255)
                                                                                                ccGCTTATTCAGATTCAGAATACGCTTTCATCATAAATCAGGATAGCGGTTTAGTCAAC‑‑T‑CT‑TGTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  8:241526/138‑1 (MQ=255)
                                                                                                ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAACTAT‑TT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  8:147265/139‑1 (MQ=255)
                                                                                                ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  8:245594/138‑1 (MQ=255)
                                                                                                ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  7:127313/138‑1 (MQ=255)
                                                                                                ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  7:170227/138‑1 (MQ=255)
                                                                                                ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTCCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                    <  1:190473/138‑1 (MQ=255)
                                                                                                  gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAACAGt                                                                                               <  1:82278/77‑1 (MQ=255)
                                                                                                  gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAACAGt                                                                                               >  2:82278/1‑77 (MQ=255)
                                                                                                  gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTAGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 <  2:125864/139‑1 (MQ=255)
                                                                                                      aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           >  2:237916/1‑125 (MQ=255)
                                                                                                      aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                           <  1:237916/125‑1 (MQ=255)
                                                                                                      aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                               <  3:219464/137‑1 (MQ=255)
                                                                                                       ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                            <  1:100102/139‑1 (MQ=255)
                                                                                                            aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATg                       >  3:17478/1‑139 (MQ=255)
                                                                                                                agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      <  1:5045/120‑1 (MQ=255)
                                                                                                                agaATACGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                      >  2:5045/1‑120 (MQ=255)
                                                                                                                      cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAAtt                                                                      <  8:110734/82‑1 (MQ=255)
                                                                                                                      cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAAtt                                                                      >  7:110734/1‑82 (MQ=255)
                                                                                                                      cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 <  4:43271/119‑1 (MQ=255)
                                                                                                                      cGCTTTCATCATAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                 >  3:43271/1‑119 (MQ=255)
                                                                                                                           tcatcaTAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTATTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaag         >  2:94456/1‑138 (MQ=255)
                                                                                                                            catcatAAATCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga        >  8:172421/1‑138 (MQ=255)
                                                                                                                                  aaaTCATGATAGCGTTTTCGTCAAC‑‑TATT‑T‑TTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAg  >  1:137607/1‑138 (MQ=255)
                                                                                                                                      |                                                                                                                                         
CAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTCAAC‑‑T‑GT‑T‑TTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAG  >  CP006881/3722911‑3723177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑