New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006881	9457 =	88 (1.250)	5 (0.080)	5/220	NT	5.0%	coding (2464/2466 nt)	U712_00040	DNA gyrase subunit A
	?	CP006881	3301929 =	106 (1.590)					coding (1392/1395 nt)	U712_16990	Arabinose‑proton symporter

TTTTGAAAAAGTTTTTACTAGTCATAATGGTCATGCTTGTGTCTTTAAAAAGACAACAGAAATGATTATACCATAATTTTTATGACTGTAAAGGGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/9596‑9457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttcaTTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCGCAAAGATCCAAAATGTATAGGCGAGCCCGAAAGAATCGAT  >  CP006881/3301929‑3302063                                                                                                                                                                                                                                                                                     TTTTGAAAAAGTTTTTACTAGTCATAATGGTCATGCTTGTGTCTTTAAAAAGACAACAGAAATGATTATACCATAATTTTTATGACTGTAAAGGGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTT                                                                                                                                           >  8:336399/1‑138                                        TGTCTTTAAAAAGACAACAGAAATGATTATACCATAATTTTTATGACTGTAAAGGGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTTCA                                                                                                                                         <  5:362346/101‑1                                        TGTCTTTAAAAAGACAACAGAAATGATTATACCATAATTTTTATGACTGTAAAGGGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTTCA                                                                                                                                         >  6:362346/1‑101                                                                                                     ACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTTCATTTTATCCAAAGCTTTTAAATTTCCTCGCGCGAGTTGTTCTACGTTTCTGGCCAGATCGTAACGACAACCAGGAAACAAATGATGGTAATCAACGCAAA                                      >  5:84634/1‑139                                                                                                           AAAAGCGCAGCTATTTCAGCTGCGCTTTTTTTCATTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCGCAAAGATCCA                                <  4:41244/139‑1                                                                                                             AAGCTCAGCTATTTCAGCTGCGCTTTTTTTGATTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCGCAAAGATCCAAA                              <  6:84634/139‑1                                                                                                                  CAGCTATTTCAGCTGCGCTTTTTTTCATTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCTCAAAGATCCAAAATGTA                         <  6:248541/139‑1                                                                                                                                 CGCTTTTTTTCATTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCGCAAAGATCCAAAATGGATAGGCGAGCCCGA            >  7:72978/1‑137                                                                                                                                        TTTCATTTTATCCAAAGCTTTTCAATTTCCTCGAGACAATTGTTCTTCGTTTCTGGACAGATAGTATCGACAAACAGGAAACAAAGGATGTTAATCACCGCAAAGCTCCAAAATGTATAGACGAGCCCGAAAGAATCGA   >  4:110065/1‑139                                                                                                                                         TTCATTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCG                                          <  5:244563/99‑1                                                                                                                                         TTCATTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCG                                          >  6:244563/1‑99                                                                                                                                          TCAATTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCCCAAAGAGCCAAAATGTATACGCGAGCCCGAAAGAATCGAT  <  3:176828/138‑1                                                                                                                                                                                                                                                                                     TTTTGAAAAAGTTTTTACTAGTCATAATGGTCATGCTTGTGTCTTTAAAAAGACAACAGAAATGATTATACCATAATTTTTATGACTGTAAAGGGTTATGACACAAAAAAGCGCAGCTATTTCAGCTGCGCTTTTTTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006881/9596‑9457 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttcaTTTTATCCAAAGCTTTTCAATTTCCTCGAGCGATTTGTTCTTCGTTTCTGGACAGATCGTAACGACAAACAGGAAACAAAGGATGTTAATCACCGCAAAGATCCAAAATGTATAGGCGAGCCCGAAAGAATCGAT  >  CP006881/3301929‑3302063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.