Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 986,184 C→A 29.9% intergenic (+50/‑200) U712_04810 → / → U712_04815 putative oxidoreductase yhdF/putative amino acid permease YhdG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP006881986,1840CA29.9% 92.6 / 7.7 61intergenic (+50/‑200)U712_04810/U712_04815putative oxidoreductase yhdF/putative amino acid permease YhdG
Reads supporting (aligned to +/- strand):  ref base C (7/31);  new base A (14/3);  total (27/34)
Fisher's exact test for biased strand distribution p-value = 1.07e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATGTTCTGCTGGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGAATAATGAC  >  CP006881/986052‑986313
                                                                                                                                         |                                                                                                                                  
aTGTTCTGCTGGCGTCTGACGAATAATACAATATTACATGGCAGACCATTCAGTTGAATTGCCGCCGTTTTTATTTAAATGAATAAAAAAAAAAAAACAGCAATAAGTGGGTTTTTTTGTGGGGTAAAATTTTaaaaa                                                                                                                               >  4:335400/1‑137 (MQ=255)
        ctgGCGTCTGACGAATCTTCCTATATGTCAGGGCAGACCCTTCATTTTAATTGAGGCAGGTTTTTTTAAAATTAATAAAAGAAAAAACCACACAAAAACTGTGTTTTTTTTGGTGGGAAAAATTGAAAAGAAAAAAAtt                                                                                                                       >  6:15742/1‑139 (MQ=255)
        ctgGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCGTTTTATTTAAACCTAAAAAAAGAAAAAACACCGCAATACCCGGTTTTTTTTGTGGTGAAAAATATAAAAATAAAAAAatt                                                                                                                      >  7:104663/1‑139 (MQ=255)
        ctgGCGTCTGACGAATATTCCAATATGACAGGGCAGACCATTCATGTTAATTGCGGGTGTTTTATTTAAACCTAATAAACCAAAAAACAGCAAAAGATCTGGTTTTTTTTTTGGTTATAAATTTAAAAATTAAAAAttt                                                                                                                      >  8:274684/1‑139 (MQ=255)
             gTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCGTTTTTTTTTAAAGGTATAAAACAAAAAACCCCACCAGAGCGGGGGTTTTTTTGGGTGTAAAAATTTAAAAAAAAAAAttttttgt                                                                                                                 >  2:304688/1‑134 (MQ=255)
                  aCGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCGTGTTTTTTCAACCTAATAAACGAAAAAACAGCTCAATAGCTGGGTTTTTTTGTGGTGAAAAATTTAAAAAAAAAAAATTTGTCGAttttt                                                                                                           >  1:67780/1‑139 (MQ=255)
                            cTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCGTTTTTTTTAAACGTAATAAACGAAAAAACAGCTCAAGAGCAGGTTTTTTGTGTGGTGAAAAATTTAAAAAAAAAAAAATTGTAGATTTTTATTACAAttt                                                                                                 >  5:289924/1‑139 (MQ=255)
                                       ggCGGACCATTCATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCAttt                                                                                      >  5:340963/1‑139 (MQ=255)
                                       ggCAGACCATTCATGTGAATGGCGGCCGTTTTATTTTAACGTAATAAACGAAAAAAAAGCTCAACAGCTGGTTTTTTTTTTGGTGTTAAATTTTAAAAAAAAAAATTTTTGGATTTTTTTTAAAATttttttttgtttt                                                                                      >  5:31575/1‑134 (MQ=255)
                                       ggCAGACCATTCATGTGAATGGCGGCCGTTTTATTTGAACGTAATCAACGAAAAACCACCGCAAGAGCTGGGTTTTTGTGTGGTGTAAAATTTGAAAATAAAAAATTTTTGGCTTTTTATTACAATTTTTTTTTGAttt                                                                                      >  7:176026/1‑139 (MQ=255)
                                       ggCAGACCATTCATGTGAATGGCGGCCGTGTTTTTTGAACGTAATCAACGAAAAACCCGCTCCAGAGCTGGGTTTTTGTGTGGTGTAAAATTTAAAAATAAAAAATTTTTGGATTTTTATTACAAGttttttttagttt                                                                                      >  5:309200/1‑134 (MQ=255)
                                       ggCAGACCATTCATGTGAATGGCGGCCGTGTTTTTTGAACGTAATCAACCAAAAAACAACTCAACAGCGGGGTGTTTGTGTGGGGTTTAAATTTAAAAATAAAAAATTTTGGGTTTTTTTGAGAAATTTTTTTTTAttt                                                                                      >  5:56273/1‑139 (MQ=255)
                                       ggCAGACCATTCATGTGAATGGCGGCCGTGTTTTTTAAACGGAAAAAAAGAAAAAACACCACAAGAGCGGGGTTTTTGTTTGGGGTAAAATTTAAAAAAAAAAAAATTTTTGATTTTTTTTAAAAATTTTTTTTGAttt                                                                                      >  5:216671/1‑139 (MQ=255)
                                       ggCAGACCATTCATGTGAATGGCGGCCGTGTTATTTCAACGGAATCAACGAAAAACCCGCGCAAGAGCGGGTTTTTTGTGTGGTGTAAAATTTCAAAATAAAAAATTTTTCGCTTTTTCTAACAATTTTGTTTTGAttt                                                                                      >  7:273938/1‑139 (MQ=255)
                                            cagaTTCATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCa                                                                                 <  1:165005/136‑1 (MQ=255)
                                            aCCATTCATGTGAATGGCGGCCGTTTTTTTTAAACCGAATCAACGAAAAAACCGCGAAAGAGGAGGTGTTTTGTGTGGTGAAAAATTTAAAAATAAAAAAATTTTGGATTTTTGTAACAAATTTTTTTTGATTTTTgg                                                                                  >  2:100333/1‑137 (MQ=255)
                                            aCCATTCATGTGAATGGCGGCCGTTTTATTTCAACGTAATAAACGAAAAACCAGCTCAAAAGCTGGTTTTTTTTTTGGTGAAAAATTTCAAAAAAAAAAAATTGTCGATTTTTATAACAATTTTTTTTTAAttttttg                                                                                  >  7:41544/1‑136 (MQ=255)
                                            aCCATTCATGTGAATGGCGGCCGTGTTTTTTGAAGGGTATAAACGAAAAAACCCCCACAAAGCGGGGTTTTTGTTTGGGGCTAAATTTGAAAAATAAAAAATTTTGCTTTTTTTTATCAACTTTTTTTTGtttttttgt                                                                                 >  2:117408/1‑136 (MQ=255)
                                            aCCATTCATGTGAATGGCGGCCGTGTTATTTAAAACTAATAAAACAAAAAAAAACACAAAAACAGGTGTTTTTTTTGGTTTTAAATATAAAAAAAAAAAAATTTTAGAATTTTTTTAAAAATTTTTTTTGAttttttg                                                                                  >  2:151801/1‑136 (MQ=255)
                                            aCCATTCATGTGAATGGCGGCCGTGGTTTTTAAACGGAATCAACGAAAAAACCGCACCAGAGCGGGGTGTTTGTTGGGGGTAAAATTTGAAAATAAAAAATTTGTGGATTTTTGTTTCAAATTTTTTTTGGTTTTTgga                                                                                 >  2:80601/1‑137 (MQ=255)
                                               aTTCATGTGAATTGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtt                                                                              <  6:206284/139‑1 (MQ=255)
                                               aTTCATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtt                                                                              <  6:174114/139‑1 (MQ=255)
                                               aTTCATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtt                                                                              <  8:210045/139‑1 (MQ=255)
                                                ttCATGTGAATGGCGGCCGTTTTTTTTAAACGTAATAAACGAAAAAACACCAAAATAGCAGGGTTTTTTTTTGGTTAAAAATTTAAAAAAAAAAAAATTTTGGATTTTTATAAAAAATTTTTTTTAATTTTTTGAAttt                                                                             >  2:37891/1‑139 (MQ=255)
                                                 tCATGTGAATGGCGGCCGTTTTTTTTAAACGTAATAAACGAAAAACCAACACAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTAAAAATAAAAAATTTTTGGTTTTTTATAAAAATTTTTTTTtgaatttttgaatttt                                                                            >  8:33074/1‑139 (MQ=255)
                                                 tCATGTGAATGGCGGCCGTTTTATTTAAAAGTAATCAAACAAAAACCAGATAAACAGCGTGTTTTTTTTTTGGTGAAAAATATCAAAAAAAAAAAATTTTAGAATTTTATAAAAAATTTTTTTTAAATTTTTCAAttt                                                                             >  7:97044/1‑138 (MQ=255)
                                                 tCATGTGAATGGCGGCCGTGGTTTTTCCACGTTATCAACGAAAAACCAGCTCAAGAGCGGGTTTTTTGTGTGGTGAAAAATTTCAAAATAATAAATTTGTGGATTTTTGTAACAATTTTGTTTTGATTTTTGGAAtttt                                                                            >  3:144670/1‑139 (MQ=255)
                                                  gaTGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtttt                                                                            <  7:163786/137‑1 (MQ=255)
                                                  cATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtttt                                                                            <  6:361815/138‑1 (MQ=255)
                                                  cATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtttt                                                                            <  6:56273/138‑1 (MQ=255)
                                                  cATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtttt                                                                            <  3:358877/138‑1 (MQ=255)
                                                  cATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAAtttt                                                                            <  2:216193/138‑1 (MQ=255)
                                                   aTGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtat                                                                          <  2:216128/139‑1 (MQ=255)
                                                   aTGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtat                                                                          <  8:354309/139‑1 (MQ=255)
                                                      tgAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtatata                                                                       <  8:104663/139‑1 (MQ=255)
                                                      tgAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtatata                                                                       <  1:151801/139‑1 (MQ=255)
                                                      tgAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTtatata                                                                       <  3:249373/139‑1 (MQ=255)
                                                        aaTGGCGGCCGTTTTATTTAAACGTAATCAACGAAAAACCACCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTGAAAATAAAAAATTTGTCGATGTTTCTTACAATTTTGTTTTGATTTTTGGAATTTtttatatt                                                                     >  7:433/1‑138 (MQ=255)
                                                           ggcggcCGTTTTATTTAAACGTAATAAACGAAAAACCAGCAAAACAGCAGGTTTTTTGTGTGGTGAAAAATTTAAAAAAAAAAAATTTTTGGATTTTTCTAAAAAATTTGTTTTGATTTTTTCAAATTtatattttaat                                                                  >  8:205970/1‑133 (MQ=255)
                                                            gcggcTGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTTGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATataata                                                                  <  7:274684/138‑1 (MQ=255)
                                                            gcggcCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATataata                                                                  <  8:97044/138‑1 (MQ=255)
                                                             cggcCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATAtt                                                                <  6:289924/139‑1 (MQ=255)
                                                                ccGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTTGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAg                                                             <  8:6377/139‑1 (MQ=255)
                                                                                         gAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTTAAAAATTTCAAATTAAAAAATTTGTCGTTTTTTCTAAAAATTTTGTTTTCATTTTTGCAATTTTATATAAAATATTGATTAGGAGAAAGGAATGATTCGCGAc                                     <  8:433/139‑1 (MQ=255)
                                                                                         gAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAc                                     >  1:38246/1‑139 (MQ=255)
                                                                                          taaaaaCCAGCTCATGAGCTGGTTTTTTGTGTGGTGAAAAATTTAAAAATAAAAAATTTGTCGATTTTTATAAAAATTTTTTTTTATTTTTTGAAATTTTATATATAATATTGAGTAGGATAAAGGATTTATTCGCGAc                                     <  6:31575/138‑1 (MQ=255)
                                                                                           aaaacCCCGCTCACTCGCTGTTTTTTTTTGTGGTGAAAAATTTAAAAATAAAAAATTTGTCGATTTTTCTAAAAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGCGTAGGAGAAAGGAATGATCCGCGAcc                                    <  5:245623/139‑1 (MQ=255)
                                                                                           aaaaaCCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTTAGTAGCACAAAGGAATTATTCGCGAcc                                    <  1:205588/139‑1 (MQ=255)
                                                                                           aaaaaCCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc                                    <  6:340963/139‑1 (MQ=255)
                                                                                           aaaaaCCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGAcc                                    <  1:304688/139‑1 (MQ=255)
                                                                                            aaaaCCAGCTCAAGAGCTGGTTTTTTGTGTGGTTAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGAAATTTTATATATAATATTGAGTAGGATAAAGGAATGATTCGCGAcc                                    <  2:67780/138‑1 (MQ=255)
                                                                                            aaaaCCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCa                                   <  5:229922/139‑1 (MQ=255)
                                                                                              aaCCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGt                                 <  7:33074/139‑1 (MQ=255)
                                                                                              aaCCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGt                                 <  1:37891/139‑1 (MQ=255)
                                                                                                       atgttgtGGTTTTTTGTGTTGTTAAAAATTTAAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTAATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAata                          <  8:41544/131‑1 (MQ=255)
                                                                                                       aaGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAata                          <  8:176026/137‑1 (MQ=255)
                                                                                                                    tttGTGTGGTTAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGaaaaaaa             <  3:172577/138‑1 (MQ=255)
                                                                                                                     ttGTGTGGTTAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTAATTTTTGAAATTTTATATATAATATTGAGTAGGAGAAAGCAATGATTCGCGACCAGTACAAATATAGTAGaaaaaaaa            <  7:205970/138‑1 (MQ=255)
                                                                                                                          tggttAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTTTTTTCATTTTTGAAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGaata       <  6:309200/138‑1 (MQ=255)
                                                                                                                          tggtgAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGaataa      >  1:245271/1‑139 (MQ=255)
                                                                                                                                aaaaaTTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATAAAATATTGAGTCGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGAATAATGAc  <  1:100333/138‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                  
ATGTTCTGCTGGCGTCTGACGAATCTTCCTATATGACAGGGCAGACCATTCATGTGAATGGCGGCCGTTTTATTTCAACGTAATCAACGAAAAACCAGCTCAAGAGCTGGTTTTTTGTGTGGTGAAAAATTTCAAAATAAAAAATTTGTCGATTTTTCTAACAATTTTGTTTTCATTTTTGCAATTTTATATATAATATTGAGTAGGAGAAAGGAATGATTCGCGACCAGTACAAATATAGTAGAAAAAAAAGAATAATGAC  >  CP006881/986052‑986313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: