| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 1,653,491 | C→T | 11.2% | T112I (ACA→ATA) | U712_08495 → | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 1,653,491 | 0 | C | T | 11.2% | 224.1 / 16.2 | 81 | T112I (ACA→ATA) | U712_08495 | GTP‑sensing transcriptional pleiotropic repressor CodY |
| Reads supporting (aligned to +/- strand): ref base C (32/39); new base T (4/5); total (36/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.37e-01 | |||||||||||
ATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTA > CP006881/1653359‑1653621 | aTCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATtgt < 4:56980/139‑1 (MQ=255) tCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAATAATtgtg < 1:113116/139‑1 (MQ=255) tCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATtgtg < 1:207892/139‑1 (MQ=255) gTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGc < 4:289776/138‑1 (MQ=255) cccTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCCTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGatcat < 2:184711/138‑1 (MQ=255) tGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCg > 5:147926/1‑137 (MQ=255) gaagaaTATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAg > 1:194977/1‑139 (MQ=255) aagaaTATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTTGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAg < 7:360434/138‑1 (MQ=255) aagaaTATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAgg < 6:147926/139‑1 (MQ=255) tataCGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCgggg < 3:148254/139‑1 (MQ=255) taCGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGATCATCGGAGGCGGGGa < 6:332780/138‑1 (MQ=255) taCGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGa > 6:214234/1‑138 (MQ=255) taCGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGa < 2:195452/138‑1 (MQ=255) taCGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTGGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGa < 5:281699/138‑1 (MQ=255) aacaTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGAGCATCGGAGGCGGGGAAAGAtt < 1:60850/136‑1 (MQ=255) aTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAgg < 3:292607/139‑1 (MQ=255) aTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAgg < 3:255737/139‑1 (MQ=255) aTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAgg < 3:242685/139‑1 (MQ=255) aTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAgg < 1:280811/139‑1 (MQ=255) aTCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAg > 5:27978/1‑138 (MQ=255) cATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGtt > 6:100967/1‑138 (MQ=255) tctAACTTGGATATTAATAGTGAATATACTGCTTTCACTTTTGAGAACAGAGAACTCTTTCAAGCTGGTATAACAACAATTGTGCCGATAATCGGAGGCGAGGAAAGATTAGGAAAACTTATTCTTTCGCGGTTAc > 8:304395/1‑136 (MQ=255) tAACTTGGATATTAATAGTGAATATACTTCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGATGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAt < 6:321926/139‑1 (MQ=255) aCTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAt < 5:100967/137‑1 (MQ=255) aCTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAt < 7:276078/137‑1 (MQ=255) ggATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAtcaatt > 2:50450/1‑138 (MQ=255) attattCGTGAATATACTGCATTACCTGTTGAGAACAGAGACCTGTGTCTAGCTGGTTTAACAACAATTTTGCCGATGCTCGGTGGCTTGGAAATTCTAGGAACACTTATTCTTTCGCGTTTACACGAtcaattcaat < 2:145247/138‑1 (MQ=255) aTAGTGAATATACTGCTTTCCGTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATGATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCCATTCAATGACGa < 3:32056/139‑1 (MQ=255) aTAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa < 2:194977/139‑1 (MQ=255) aTAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa < 5:306878/139‑1 (MQ=255) aTAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa < 5:214234/139‑1 (MQ=255) aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATtgtg < 8:79094/62‑1 (MQ=255) aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATtgtg > 7:79094/1‑62 (MQ=255) aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa > 3:91419/1‑133 (MQ=255) aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGa < 4:91419/133‑1 (MQ=255) aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACt > 5:19459/1‑138 (MQ=255) aaTATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAGCATTTCAATGACGATGACt > 1:35473/1‑138 (MQ=255) cagCTTTCCCTGTTGACTACCCAGAACTGTTTGAATCTGGGTTAACAAAAAATGTGCCCATCAATGGATGGGGGGTAAGTTTATGAAAACATAATCATTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc < 6:30904/136‑1 (MQ=255) cTGCTTTCCCTGTTGAGATCAGATACCTGTTTCAAGCTGGTTTAACATCAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc < 5:47330/138‑1 (MQ=255) cTGCTTTCCCTGTTGAGAACAGAGACCAGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc < 5:39135/138‑1 (MQ=255) gCTTTCCCTGTTGAGAACAGAGCCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCTGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAACATCAATTCAATGACGATGACTTAATTCTAg > 5:128141/1‑139 (MQ=255) gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAt < 4:212870/111‑1 (MQ=255) gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGAt > 3:212870/1‑111 (MQ=255) gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg > 1:1093/1‑139 (MQ=255) gCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTGCGCGTTTACAGTTTCATTTCATTAAGGATGACTTAATTTTAg > 5:30904/1‑139 (MQ=255) cTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg < 1:50450/138‑1 (MQ=255) cTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg < 6:19459/138‑1 (MQ=255) tttCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAAcaacaa < 4:71611/47‑1 (MQ=255) tttCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAAcaacaa > 3:71611/1‑47 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAgg < 4:370190/79‑1 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAgg > 3:370190/1‑79 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc > 7:317325/1‑132 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc < 8:317325/132‑1 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg > 1:20780/1‑135 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAg < 2:20780/135‑1 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTg > 6:314610/1‑138 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTg > 8:157225/1‑138 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTg > 7:244139/1‑138 (MQ=255) tCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTGTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTg > 8:87394/1‑138 (MQ=255) ccTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGaa > 2:160311/1‑138 (MQ=255) cTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATa < 3:267884/139‑1 (MQ=255) cTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATa < 2:1093/139‑1 (MQ=255) cTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGGTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATa < 1:244276/139‑1 (MQ=255) aaCAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa < 7:202311/139‑1 (MQ=255) aaCAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGGGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACATATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCaa < 8:124880/139‑1 (MQ=255) aCAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc > 1:253785/1‑120 (MQ=255) aCAGAGACCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTc < 2:253785/120‑1 (MQ=255) agaCCTGTTTCAAGCTGGTTTAACAATAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt > 8:249713/1‑139 (MQ=255) agaCCTGTTTCAAGCTGGTTTAACAATAATTGTGACGATCATCGGAGTCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt > 2:50358/1‑139 (MQ=255) agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATa > 2:187887/1‑126 (MQ=255) agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt > 3:44761/1‑139 (MQ=255) agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGtt > 3:104187/1‑139 (MQ=255) agaCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGAGCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATa < 1:187887/126‑1 (MQ=255) aCCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGt < 4:104187/139‑1 (MQ=255) cTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCg < 6:27978/139‑1 (MQ=255) tttCAAGCTGGTTTAACAACTATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGaa > 7:339099/1‑139 (MQ=255) tttCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGaa > 1:346735/1‑139 (MQ=255) tttCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGaa > 4:23513/1‑139 (MQ=255) gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc > 2:45538/1‑138 (MQ=255) gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc > 1:36065/1‑138 (MQ=255) gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc > 6:264942/1‑138 (MQ=255) gTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATcc > 4:169130/1‑138 (MQ=255) tttAACAATAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTa < 7:249713/139‑1 (MQ=255) | ATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTA > CP006881/1653359‑1653621 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |