Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 3,304,242 | C→A | 11.6% | T240K (ACA→AAA) | U712_16995 → | Arabinose metabolism transcriptional repressor |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 3,304,242 | 0 | C | A | 11.6% | 174.1 / 2.0 | 69 | T240K (ACA→AAA) | U712_16995 | Arabinose metabolism transcriptional repressor |
Reads supporting (aligned to +/- strand): ref base C (35/25); new base A (2/6); total (37/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.29e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTTTCTCTCGGCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGTGATTGATATGCTGAG > CP006881/3304112‑3304377 | cTTTCTCTCGGCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTTAAACGGATTAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACaa < 1:26261/139‑1 (MQ=255) tctctcGGCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAAc < 8:54212/137‑1 (MQ=255) tctctcGGCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAAc < 8:332120/137‑1 (MQ=255) ctctcGGCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACgg > 6:359043/1‑138 (MQ=255) gCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTGCTTCTCCGGATATGATCGTGACATTTACAACGGAAGaaa > 1:313550/1‑138 (MQ=255) gCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGCTATGATGGTGACTTTTACAACGGAAGcaa > 1:313551/1‑138 (MQ=255) cacGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGaa > 6:168342/1‑139 (MQ=255) acGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAAt > 5:316400/1‑139 (MQ=255) cATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCaa < 5:359043/139‑1 (MQ=255) attatGATGGTTATTTTTAAAGCTGATGACACACATGGCGTGAAACGTATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTACTTCTCCGGATATGATCGTGACATTTACACGGGAAGAAAAAGAATCaa < 5:302591/137‑1 (MQ=255) atgatgGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATATACAACGGAAGAAAAAGAATCAAAAc > 3:264808/1‑139 (MQ=255) tgGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTGTCCTACTCCCGATATGAACTTTAAAGTTACAAAGGAACAAAAAGAAAAAAAACTTcg > 3:214215/1‑138 (MQ=255) ggTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTGCGTCTCCGGATATTATAGTGTCATTTTAAACGGAAATAAAAGAATCAAAAAGTCTgg > 2:185947/1‑139 (MQ=255) ggTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGCCATTTACAACGGAAGAAAAAGAATCAAAACTTCTg > 3:87082/1‑138 (MQ=255) ggTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTgg > 2:368449/1‑139 (MQ=255) ggTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTg > 8:1040/1‑138 (MQ=255) ggTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCAGGATATGCTCGTGACATTTACAACGGAAGAAAAAGCATAAAAACGTCTgg > 6:44931/1‑139 (MQ=255) tATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACtt > 8:39337/1‑133 (MQ=255) tATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACtt < 7:39337/133‑1 (MQ=255) tATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTAAAACGGAAGAAAAAGAATCAAAACTTCTg > 6:344723/1‑136 (MQ=255) tttttAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTGCTTGTCCGGATATGATCGTGACATTTACAACGGAACAAAAAGAATCAAAACTTATGgtga > 2:140836/1‑138 (MQ=255) tAACGCTGATGACACACACGGCGGTACCCGGATGAACGGTTTTATACAGGCGCACCGGGCGCGTGAGTTGTTTCCTTCTCGGGATATGCTCGGGACATTTACAACGGAAGAAAAACAATCAAAACTTCTGGAGAAAGt < 4:87082/138‑1 (MQ=255) atgCTGATTACCCACTTGGCGTGAACCTTTTTAACGTTTTTATACAGGCGCACCGGGAGGGTGTGTTGTTTCTTTCTCCGTATATGAGCGTCACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTaaa < 2:313550/137‑1 (MQ=255) gCTGATGACACACACGGCGTGAACCGGATGAACGGATTTATACCGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAg < 7:95745/139‑1 (MQ=255) atgaCACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCcac > 7:227112/1‑139 (MQ=255) atgaCACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCca > 1:58520/1‑138 (MQ=255) atgaCACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCca > 2:128690/1‑138 (MQ=255) atgaCACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCca > 1:20895/1‑138 (MQ=255) atgaCACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAAACAAAACTTCTGGAGAAAGTAAAAGCca > 3:46339/1‑138 (MQ=255) atgaCACACAAGGCGTGAAACGGATGAACGGATTAATACACGCGCACCGGGAGCGTGAGTTGTTTCCTTATCCGGATATGATCCTGAAATATACAACGGAAGAAAAAGAATCAAAAATTCTGGAGAAAGTAAAAGCca > 6:186129/1‑138 (MQ=255) aGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTTGAGAAATTAAAAGCCACACTGGAGaa > 4:207732/1‑138 (MQ=255) aGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGaa > 3:159046/1‑138 (MQ=255) ggCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGaaa > 7:305278/1‑138 (MQ=255) aaaCGTATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGTATATGATCGTTAAATTTACAACGCAACAAAAAGAATAAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACagc < 1:185947/138‑1 (MQ=255) aaaCGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACagc > 4:294675/1‑138 (MQ=255) aaaCGGATCAACGGTTTTAAACAGGCCCCCCGGGTGCGGGAGTTGTTTCCTTCTCCGTATATGTGCGTGAAATTTACAACGGAAGAAAAACAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACagc < 1:368449/138‑1 (MQ=255) aCGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACagcaag < 4:159046/139‑1 (MQ=255) gATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGgaga < 7:22872/104‑1 (MQ=255) gATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGgaga > 8:22872/1‑104 (MQ=255) gcgcACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGga > 4:261699/1‑83 (MQ=255) gcgcACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGga < 3:261699/83‑1 (MQ=255) gcgcACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCttt > 8:72854/1‑139 (MQ=255) gcgcACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTAAAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAATCCACACCGGAGAAAAACAGCAAGCACATGCCGACCGCCATTCttt > 5:338956/1‑139 (MQ=255) gcgcACCGGGAGCGTGAGTTGTTTCCTTCGCCGGATATGATCGTGACAGTTTCAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTATAAGCGACACTGGAGAAAAACAGCAAGCACATGCCGGCAGCCATTCttt > 7:365772/1‑139 (MQ=255) aCCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTta > 7:220496/1‑139 (MQ=255) aGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGa < 2:20895/139‑1 (MQ=255) aGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGa < 8:220496/139‑1 (MQ=255) aGCGTGAGTTGTTTCATTCTCCGGTTATGATCGTTACATTTACAACGGAAAAAAAAGAATAAAAACTTCTGCAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGa < 4:46339/139‑1 (MQ=255) aGCGTGAGGTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACCGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGa > 3:23101/1‑139 (MQ=255) aGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAAt > 3:76690/1‑139 (MQ=255) gtttttTCATTCTCCGGATCTGATTGTTAAAATAACACCGTAAGAAAAATAATCAAACCTTCTGGAGAAAGTAAACGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAAt < 3:312938/138‑1 (MQ=255) gttgttTCCTTCTCGGGATATCATCGTTAAATTAACAACGTAATAAAAATAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAAt < 1:140836/138‑1 (MQ=255) gttTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGt < 6:168443/69‑1 (MQ=255) gttTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGt > 5:168443/1‑69 (MQ=255) tttCCTTCTCCGGATATGAGCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTgcg < 5:59923/138‑1 (MQ=255) ccTTCTCCTGATATTATCGTTACATTTACAACGTAACAAAAATAATCAAAAATTCTGTAGAAATTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGa < 5:344723/139‑1 (MQ=255) ccTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTg < 3:294675/138‑1 (MQ=255) cTTCTCCGGATATGTTCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGa < 8:305278/138‑1 (MQ=255) tctcCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCAATCTTTGTTATAACGATGAAATTGCGCTGAAgg > 1:312572/1‑139 (MQ=255) cggtatatGATCGTAATTTTTACAACGTAACAAAATTATTCAAAAATTCTGGTGAAATTAAAAGCCACACTGGAGAAAAACATCAAGCCCATGCCGACAGCCATTCTTTGTTATAACGATGAATTTGCGCTGAAGGtga < 5:186129/135‑1 (MQ=255) cGGTTATGATCTTTAAATTTACAACGGAAGAAAATGATTCAAAACTTCTTGAGAATGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAATGt < 6:130829/136‑1 (MQ=255) cGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACCCTGGAGCAAAACAGCAAGCACATGCCGCCAGCCATTCTTTGTTATACCGATGAAATTGCGCTGAAGGtcat > 7:70143/1‑139 (MQ=255) cGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGtga < 7:72854/138‑1 (MQ=255) tatttGATCGTTAAATTTAAAACGTAATAAAAATAATAAAAACTTCTGTATAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGtgattg < 4:264808/135‑1 (MQ=255) tGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGTGATTGata < 3:78575/138‑1 (MQ=255) tCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGTGATTGATATGCt < 7:277567/139‑1 (MQ=255) gTGACATTTACAACGGAATAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGTGATTGATATGCTGa < 8:304264/139‑1 (MQ=255) gTGACATTTACAACGGAACAAAAACAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGTGATTGATATGCTGa < 4:51881/139‑1 (MQ=255) tGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGTGATTGATATGCTGAg > 7:266753/1‑139 (MQ=255) | CTTTCTCTCGGCCACACGCATATGATGGGTATTTTTAAAGCTGATGACACACAAGGCGTGAAACGGATGAACGGATTTATACAGGCGCACCGGGAGCGTGAGTTGTTTCCTTCTCCGGATATGATCGTGACATTTACAACGGAAGAAAAAGAATCAAAACTTCTGGAGAAAGTAAAAGCCACACTGGAGAAAAACAGCAAGCACATGCCGACAGCCATTCTTTGTTATAACGATGAAATTGCGCTGAAGGTGATTGATATGCTGAG > CP006881/3304112‑3304377 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |