BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP006881	3,723,045	T→C	100%	intergenic (‑159/‑142)	U712_19190 ← / → U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	3,723,045	0	T	C	100.0%	403.8 / ‑6.6	109	intergenic (‑159/‑142)	U712_19190/U712_19195	PTS system sucrose‑specific EIIBC component/putative transporter ywcJ
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (43/65); minor base A (1/0); total (44/65)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 109 total aligned reads displayed.

AACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTC‑AACT‑GT‑TTTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGA  >  CP006881/3722909‑3723179

aaCAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCAt                                                                                                                                         >  5:176843/1‑139 (MQ=255)

   aaaaaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGAt                                                                                                                                      <  2:331534/139‑1 (MQ=255)

      aaaGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGc                                                                                                                                   >  7:332659/1‑139 (MQ=255)

               aaaTTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGt                                                                                                                           <  8:358671/138‑1 (MQ=255)

                         aCGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGTTCTTGCCTGCTATACCAGTCACAATACCGCTTATTCAGATTAACAATACTCTTTAAACATAAAACAAGATAGCGTTTACTTC‑AACT‑At‑tata                                                                                                             >  8:186470/1‑136 (MQ=255)

                          cGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACT‑At‑ttttt                                                                                                            <  4:339647/139‑1 (MQ=255)

                                     cacaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAg                                                                                                  <  1:200977/139‑1 (MQ=255)

                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 >  5:17355/1‑139 (MQ=255)

                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 <  5:359365/139‑1 (MQ=255)

                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 <  6:348470/139‑1 (MQ=255)

                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 <  1:209860/139‑1 (MQ=255)

                                      acaGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 <  8:333435/139‑1 (MQ=255)

                                       caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGtt                                                                                                <  8:180939/139‑1 (MQ=255)

                                       caGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGtt                                                                                                <  7:69201/139‑1 (MQ=255)

                                        aGCGATCATTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCATAATCCCGCTTATTCAGATTAAGAATACGCTTTGATCATAAATCATGATAGCGTTTTGGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 <  7:186470/137‑1 (MQ=255)

                                         gCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTg                                                                                              <  7:201910/139‑1 (MQ=255)

                                           gATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGAt                                                                                            <  8:1862/139‑1 (MQ=255)

                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 <  3:221705/132‑1 (MQ=255)

                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 >  4:221705/1‑132 (MQ=255)

                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATa                                                                                           >  8:357999/1‑138 (MQ=255)

                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATa                                                                                           >  5:36378/1‑138 (MQ=255)

                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATa                                                                                           >  2:56326/1‑138 (MQ=255)

                                             tCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATa                                                                                           >  6:25044/1‑138 (MQ=255)

                                                       tttACGCAAATTTTAGGTCTTGCCTGCTAAACCAGTCACAAACACGCTAATTCAGATAAAGAATACGCTTACATCATAAATCATGATAGAGTTTTCGTC‑AACT‑ATATTTTTATTTAAATAGTTTGATATAACATGTAGa                                                                                >  6:120119/1‑139 (MQ=255)

                                                         tACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGAc                                                                               >  2:314404/1‑138 (MQ=255)

                                                          aCGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACa                                                                              >  4:305723/1‑138 (MQ=255)

                                                          aCGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACa                                                                              >  3:532/1‑138 (MQ=255)

                                                                aTTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 <  4:262511/113‑1 (MQ=39)

                                                                aTTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGt                                                                                                 >  3:262511/1‑113 (MQ=39)

                                                                    tAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTa                                                                    <  5:35843/138‑1 (MQ=255)

                                                                        tCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTaaaaat                                                               <  5:49673/139‑2 (MQ=255)

                                                                           tGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATata                                                                                         >  1:265580/1‑108 (MQ=255)

                                                                           tGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATata                                                                                         <  2:265580/110‑3 (MQ=255)

                                                                            gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTaaa                                                                                                     >  8:295446/1‑97 (MQ=255)

                                                                            gCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTaaa                                                                                                     <  7:295446/97‑1 (MQ=255)

                                                                            gCCTGCTTTACCAGTCACAAT‑CCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAaattaatt                                                          >  3:260063/1‑139 (MQ=255)

                                                                                 cTTTACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATtgtg                                                       <  5:196027/138‑1 (MQ=255)

                                                                                    tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAGTTGTGaaa                                                    <  6:36378/138‑1 (MQ=255)

                                                                                    tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                    <  1:93064/138‑1 (MQ=255)

                                                                                    tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                    <  6:17355/138‑1 (MQ=255)

                                                                                    tACCAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaa                                                    <  7:357999/138‑1 (MQ=255)

                                                                                      ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  4:358296/138‑3 (MQ=255)

                                                                                      ccAGTCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGaaata                                                  <  3:210295/138‑3 (MQ=255)

                                                                                          tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                             <  1:100256/139‑1 (MQ=255)

                                                                                          tCACAATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                             <  8:59914/139‑1 (MQ=255)

                                                                                          tCACAATCCCGCTTATTCAGATTAAGAATACGCTATCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTca                                             <  3:248125/139‑1 (MQ=255)

                                                                                           cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTTAAATACTTca                                             >  6:208082/1‑138 (MQ=255)

                                                                                           cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACT‑At‑ttttt                                                                                                            >  4:141357/1‑74 (MQ=255)

                                                                                           cacaATCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACT‑At‑ttttt                                                                                                            <  3:141357/74‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  3:145371/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  1:155877/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  8:361331/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  8:332659/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  2:180841/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  7:334749/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  2:31394/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  3:305723/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  4:75550/139‑1 (MQ=255)

                                                                                               aTCCCGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  3:46916/139‑1 (MQ=255)

                                                                                                gatcGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  1:230832/135‑1 (MQ=255)

                                                                                                 cccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                      <  3:33845/139‑1 (MQ=255)

                                                                                                  ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                      <  1:314404/138‑1 (MQ=255)

                                                                                                  ccGCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATc                                      <  5:206544/138‑1 (MQ=255)

                                                                                                    gcatATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  3:260179/136‑1 (MQ=255)

                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  4:532/139‑1 (MQ=255)

                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  7:241473/139‑1 (MQ=255)

                                                                                                    gCTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  5:120119/139‑1 (MQ=255)

                                                                                                     cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   <  4:295511/138‑1 (MQ=255)

                                                                                                     cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   >  3:295511/1‑138 (MQ=255)

                                                                                                     cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                  >  6:224347/1‑139 (MQ=255)

                                                                                                     cTTATTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGc                                  >  3:130690/1‑139 (MQ=255)

                                                                                                      gtATTCAGATTAAGAATTCGCTTTCATCATATATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACTAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCt                                 <  2:244993/138‑1 (MQ=255)

                                                                                                        aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  5:7728/130‑1 (MQ=255)

                                                                                                        aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  6:7728/1‑130 (MQ=255)

                                                                                                        aTTCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGGTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGGGAAATACTTCACAATATCGTGCt                                 <  5:345696/137‑1 (MQ=255)

                                                                                                         ttCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAAATCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCtata                              <  5:84967/139‑1 (MQ=255)

                                                                                                          tCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATAc                             >  1:277582/1‑139 (MQ=255)

                                                                                                          tCAGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTAGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATAc                             >  5:308231/1‑139 (MQ=255)

                                                                                                            aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                            <  6:324614/138‑1 (MQ=255)

                                                                                                            aGATTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACt                            <  6:176843/138‑1 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCTTCATAATTCATGATAGCGTTTTCGTC‑AACT‑ATATTTTTAGTTTAATAGTTTGATATAAAATGTAGACAAAAATACTTAAAAATTAATTGTGAAATACTTACCAATATAGTGCTATTCTAt                          >  3:201683/1‑138 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  1:293776/124‑1 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  5:97727/124‑1 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  6:97727/1‑124 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  2:61755/1‑124 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  1:61755/124‑1 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  2:293776/1‑124 (MQ=255)

                                                                                                              aTTAAGAATACGCTTTCATCATAAATAATGATAGCGTTTTCTTCAAAAA‑TT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAAATATTAAAAATTAATTGTGAAATACTTCAAAATATAGTCATATAcatg                          >  2:230832/1‑135 (MQ=255)

                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        >  5:85567/1‑114 (MQ=255)

                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAata                                        <  6:85567/114‑1 (MQ=255)

                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTg                                   >  7:7870/1‑119 (MQ=255)

                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                >  7:81830/1‑138 (MQ=255)

                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                >  5:302804/1‑138 (MQ=255)

                                                                                                                        cGCTTTCATCATAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCAt                >  6:362331/1‑138 (MQ=255)

                                                                                                                              catcatAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                            <  5:206742/88‑2 (MQ=255)

                                                                                                                              catcatAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTaa                                                            >  6:206742/1‑87 (MQ=255)

                                                                                                                              catcatAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga          >  2:357703/1‑138 (MQ=255)

                                                                                                                              catcatAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGaaaga          >  5:118709/1‑138 (MQ=255)

                                                                                                                              catcatAAATCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAATTTGATATTACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTAAATCATGaaaga          >  1:186407/1‑138 (MQ=255)

                                                                                                                                     aaTCATGATAGCGTTTTCGTC‑AACTATT‑TTTTTAGTTAAATAGTTTGATATAACATGTAGACAAAAATTCGTAAAAATTAATTGTGAAATACTTCACAATATCGTGCTATACTATGCTCAATCATGAAAGAAAGCAGGa  <  5:37150/139‑1 (MQ=255)

AACAAAAAAGACCTAAAATTCGCCAACGAATAAAGGACACAGCGATCCTTTTTCATTTACGCAAATTTTAGGTCTTGCCTGCTTTACCAGTCACAATCCCGCTTATTCAGATTGAGAATACGCTTTCATCATAAATTATGATAGCGTTTTCGTC‑AACT‑GT‑TTTTTAGTTAAATAGTTTGATAAAACTTTTAGACAAAAATTCGTAAAAACTATTTGTGAAAAACTTCACAATATCGTGCTATACTATGCTCAACCATCAAAGAAAGCAGGA  >  CP006881/3722909‑3723179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`