| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 983,107 | C→A | 11.7% | *292Y (TAG→TAT) | U712_04800 ← | HTH‑type transcriptional regulator CitR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 983,107 | 0 | C | A | 11.7% | 221.1 / 3.1 | 92 | *292Y (TAG→TAT) | U712_04800 | HTH‑type transcriptional regulator CitR |
| Reads supporting (aligned to +/- strand): ref base C (39/39); new base A (2/10); total (42/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTACAAATCAGCAGCCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCTAACTCA > CP006881/982970‑983245 | cGTACAAATCAGCAGCCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTcc > 7:137845/1‑138 (MQ=255)cGTACAAATCAGCAGCCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTcc > 3:350346/1‑138 (MQ=255)cGTACAAATCAGCAGCCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTcc > 2:19036/1‑138 (MQ=255) tACAAATCAGCAGCCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTGTTGT‑TTTCTCCTa > 1:320166/1‑138 (MQ=255) tACAAATCAGCAGCCAGAACAACAGATACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATACTAATTTTTAGAGAAAACCCTTTCATTGGAAC‑CGTTTTATTACATTAGACGGAGCACATGCGTTTTTG‑TAGCACCTa > 7:321613/1‑138 (MQ=255) agcagcCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTGTTTG‑TTGGGCCGAaaaaagaa > 3:218257/1‑138 (MQ=255) agcagcCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTGTTGG‑TTTCTCCTAaaaattaa > 4:46814/1‑138 (MQ=255) agcagcCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGATTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTTCTCCGAaaaattaa > 2:94206/1‑138 (MQ=255) cagcCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAaaaatgcaaat > 6:298868/1‑139 (MQ=255) cagcCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAaaaatgaaaat > 3:394833/1‑139 (MQ=255) cagcCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTGTTTG‑TTGGGCCGAaaaatgaaaa > 1:153070/1‑138 (MQ=255) cagcCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAAACAGATCATTGGAAC‑GGGTTTTTTACATTAGACGGAGCACAGGCGTTTTTG‑TATCGCCAAaaaaagaaaaa > 1:298577/1‑138 (MQ=255) ccTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGGTCCGAAAAATGAAAAtgtg > 5:218857/1‑139 (MQ=255) ccTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTGCTAAAAATGAAAAtttg > 5:331184/1‑139 (MQ=255) ccTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAaaaattaaaaatt > 4:74157/1‑135 (MQ=255) aacaacAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTTGAAC‑GGGTTTTTTTCATTAGACCGAGCAGAGGCGTTTTTG‑TTGGTCATTAAAATTAAAATGTGATa > 5:8274/1‑138 (MQ=255) aacaacAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATAGGAAC‑GGGTTATTTTCATTAGACGGAGCACACGCCTTTTGG‑TTTCACCAAAAAAAAAAAATATGATa > 5:216422/1‑138 (MQ=255) aGCTACTGGAAGCCTCGTTACCTCGGTGCGAAATGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATc > 4:181439/1‑139 (MQ=255) aGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTTGTCCTATAAATGAAAATTTTTTTAAAAAt > 2:370691/1‑138 (MQ=255) aCTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTGTTGG‑TTGGTCCTAAAAAAGAAAATGTGATAAAAAATcc > 3:374524/1‑136 (MQ=255) aCTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTGTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAg > 4:96557/1‑139 (MQ=255) aCTGGAAGCCTCGTTACCTCGGAGCGAAAAGATTCTAATATTTAGAGAAAACCCCATCAATGGAAC‑GGGTTTTTTTCATTAGACGGAGCACACGCGTGTTTG‑TTTGTACAAAAAAAAAAAAAATTATAAAAAAACCaa > 4:31671/1‑138 (MQ=255) cTGGAAGCCTCGTTTCCTCGTTGCGAATAGATTCTAATTTTTAGATAATACACGTTCTTTTGAAC‑GGTTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTACTAAAAATGAAAATGTGATAAAAAATCCAAg < 3:81682/138‑1 (MQ=255) cTGGAAGCCTCGTTACCTCGGTGCGAAATGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAg < 3:181439/138‑1 (MQ=255) cTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAg < 6:285749/138‑1 (MQ=255) ccTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGGTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCCAAGGCGGGTTTG‑TTTATGACAAAAATATAAAAAGGATTAAAAATCAAAAAACtgttt > 5:253982/1‑139 (MQ=255) cGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATTAAAATGTGATTAAAAATCCAAGAACTTTTtttc > 8:192937/1‑139 (MQ=255) cGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGGTTTGTACTTAAAAATAAAAAT‑TTTTAAAAAAAAAAAAAACTTTTTTTTTTtattat > 5:265893/1‑139 (MQ=255) ggTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTa < 8:201702/137‑1 (MQ=255) ggTGCGAAAAGATTCTAATTTATAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGATCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTAtt < 5:243426/139‑1 (MQ=255) tGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTTCTCCTAAAAATTAAAATGTTATAAAAAATCCAAGAACTTTTTTTCTTTATCAtttt > 6:127355/1‑139 (MQ=255) tGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTACAAAAAATGAAAATTTGATAAAAAAAACAAGAACTTTTTTTATTTATTAttt > 6:153540/1‑138 (MQ=255) gCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTACTAAAAATTAAAATGTGATAAAAAAAACAAGAACTTTTTTTCTTTATTAtttt > 4:278746/1‑138 (MQ=255) aTTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑GTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGCACTTTTTTTCTTTGTTATTTTCATAAAggg > 1:49277/1‑139 (MQ=255) ttCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTATCATAAAggg > 6:147223/1‑138 (MQ=255) ttCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACGTTTTTTCTTTCTTATTTTAATAAAtgg > 6:139063/1‑138 (MQ=255) ttCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑GTGGTCCTTAAAATGAAAATGTGATAAAAAAACCAAGAACTTTTTTTCTTTCTTTTTTTCATAAAggg > 3:191387/1‑138 (MQ=255) ttCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑GTGCTCCTAAAAATTAAAATGTGATAAAAAATCCAAGAACTTTTTTTGTTTCTTATTTTGATTAAGGGc > 3:339626/1‑139 (MQ=255) ttAGAGAAAACCCGTTCATTGGAAG‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATTTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGt < 2:273565/138‑1 (MQ=255) tAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTa < 6:398994/138‑1 (MQ=255) tAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTa < 4:154328/138‑1 (MQ=255) acaaaaCCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATTAAAATGTTATAAAAAATCCAACAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAgcg < 1:370691/137‑1 (MQ=255) taaaaCCCGTTC‑TTGGTACGGGGTTTTTTTCATTAGACGGAGCACCGGCGTTTTGG‑TTGCTCCAAAAATTTAAAATGTGATAAAAAATCCATTAACTTTTTTTCTTTATTATTTTCATAATGGGAAAGCGCGTAAgcgc < 4:212469/138‑1 (MQ=255) gaAAACCGGTTCTTTGGAAC‑GGTTTTTTTTCATTAGACGGAGCACTGGCGTTTTGG‑TTGCTCATAAAAATCAAAATGTGATAAAAAATCAAAGAACTTTTTTTGTTTCTTATTTTAATAATGGGCAATCGCGTAAgcgc < 4:374524/139‑1 (MQ=255) gaAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAgcgc < 1:86856/139‑1 (MQ=255) gaAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTACTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTAATAAAGGGCAATCGCGTAAgcgc < 1:132401/139‑1 (MQ=255) cgcGTTAATTGGTAG‑GGGTTTTTTTCATTAGTCGGATAAATGGCGTTTTGG‑TTGCTCATAAAAATGAAAATGTGATAAAAAATCCATTAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCa < 8:321613/137‑1 (MQ=255) ccccTTCATTGGAAC‑GGTTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGAAAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCa < 7:158438/139‑1 (MQ=255) cccTTTCATTGGAAC‑GGGTTTTTTTAATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCATAAAAATGAAAATGTTAAAAAAAATCCAAGAACTTTTTTTCTTTATTATTTTCATAACGGGCAATCGCGTAAGCGCCGGCa < 4:218257/139‑1 (MQ=255) cccGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCa < 8:137845/139‑1 (MQ=255) gTTCATTGGAAG‑GGGTTTTTTTCATTAGACGGAGCCAAGGCGTTTGGG‑TTCCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTGTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAg < 6:218857/139‑1 (MQ=255) gTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCAGAGGCGTTTTGG‑TTGCTCCTAAAATTGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAg < 2:278353/139‑1 (MQ=255) gTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCTAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAg < 8:24847/139‑1 (MQ=255) gTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCATAAAAATTAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAg < 4:350346/139‑1 (MQ=255) cATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAggg < 3:358875/138‑1 (MQ=255) cATGGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCATAAAAATTAAAATGTGATAAAAAATCCAACAACTTTTTTTCTTTATTATTTTCATAAAGGGCAATCGCGAAAGCGCCGGCATAggg < 4:271445/138‑1 (MQ=255) aTTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTATCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCa < 5:147223/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTTGCCGGCGCCCAGGGGTTTTGG‑TTGATCATAAAAATTAAAATGTGAAAAAAAATCCAATAACTTTTTTTCTTTCTTATTTTCATAACGGGCAATCGCGTACGCGCCGGCATAGGGCAg < 6:216422/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 6:309689/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 6:192964/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 3:46814/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 3:74157/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 3:96557/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 5:153540/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCATAAAAATTAAAATGTGATAAAAAATCCAATAAATTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 1:157343/139‑1 (MQ=255) ttGGAAC‑GGGTTTTTTTCATTACCCGCAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAACGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 3:28518/139‑1 (MQ=255) tGGAAC‑GGTTTTTTTTAATTTGACGGAGCACAGGGTTTTTGG‑TTGCTCCTAAAAATTAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTATTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 8:23372/138‑1 (MQ=255) tGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTCGTGG‑TGGAGACGAAAAAATAAAATGTGAAAAAAAATCCAATAACTGTTTTTATTTCTTATATTCAAAAAGTGCCATCGCCGAAGCGCCCGCAAGGagcagc > 4:128178/1‑139 (MQ=255) tgttaggggTTTTTTTCATTAGACGGAGCACAGGCGTTGTGG‑TTGCTCCTAAAAATTAAAAGGTGATAAAAAATCCAAGAAGTTTTTTGATTTCTTATTTTCATAATGGGCAATCGCGTAAGCGCCGGCATAGGGCAg < 4:225987/132‑1 (MQ=255) tgtaatgggTTTTTTTCATTAGACGTATCACAGGGGTTTTGT‑TTGCTCGTAAATTTTAAAATGTTATAAAAAATCCATGAACTTTTTTTCTTTCTTATTTTAATAAAGGTATATCGGGTATGCGTCTGCATAGGGCAg < 8:52420/132‑1 (MQ=255) aC‑GGGTTTTTTTCATTAGACGGAGCACAGTCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTa < 5:201845/139‑1 (MQ=255) c‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTa > 3:155982/1‑138 (MQ=255) ggttttttttAATTAGACGGCGCACAGGCGTTTTGG‑TTGCTCATAAAAATTAAAATGTTAAAAAAAATCCAACAACTTTTTTTCTTTATTATTTTAATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACa < 6:241768/136‑1 (MQ=255) gggTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACa < 1:169997/139‑1 (MQ=255) gggTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACa < 5:139063/139‑1 (MQ=255) gggTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACa < 5:298868/139‑1 (MQ=255) gTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGa < 4:132383/139‑1 (MQ=255) gTTTTTTTCATAAGACGGACCACATGCGGTTTGT‑TTGCTCCAAAAAAAGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGa < 3:45018/139‑1 (MQ=255) ttttCATTAGACGCTGCAGAGGGGTTTTGG‑TTTCTACTTAAAATATAAATGTCTTAAAAAATCCAACAAGTTTTTTTCTTTTTTTTTTTAATAAAGGGAATTCGCTTAAGCGCCGGCATAGGGCAGCTGTACAGACTg < 3:31671/138‑1 (MQ=255) gCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGatc < 7:109865/139‑1 (MQ=255) aGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCa > 8:247915/1‑99 (MQ=255) aGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCa < 7:247915/99‑1 (MQ=255) aGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATACAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCt > 1:262246/1‑139 (MQ=255) ggCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTg > 3:154272/1‑139 (MQ=255) tttttGG‑TTGATCATAAAAATTAAATTTTTATAAAAAATCCAAGAATTTTTTTTTTTTTTTATTTTCATAAAGGGCAATCGGGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGttt < 6:265893/138‑1 (MQ=255) ttttGG‑TTGGGGCTAAAAAAGAAAATGTGATAAAAAATACAAGAACTTTTTTTATTTATTATTTTCATAAAGGGCAATCGCGTAAACGCCGGCATAGGGCAGCTGTACCGACTGATAAGGAATTATGATCATATGTTtc > 4:143493/1‑139 (MQ=255) ttttGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTtc > 7:325703/1‑139 (MQ=255) ttttGG‑TTGCTCATAAAAATTAAAATGTTATAAAAAATCAAAGAACTTTTTTTCTTTATTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTtc < 2:286778/139‑1 (MQ=255) ttGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTtctc > 7:345719/1‑139 (MQ=255) g‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGc < 4:293078/139‑1 (MQ=255) g‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGc < 3:143493/139‑1 (MQ=255) tGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCt > 8:40229/1‑138 (MQ=255) cTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCTAAc > 5:346920/1‑139 (MQ=255) cTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCTAAc > 3:107824/1‑139 (MQ=255) cTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTATTTCTTATTTTCATAAAGGGAAATCGCGTAAGCGCCGGCATAGGGCTGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCTAAc > 1:343611/1‑139 (MQ=255) cTAAAAATGAAAATGTGATTAAAAATCCACCAACTTTTTTTCTTTATATTTTAGATAATGGGCTTCTGCGTTAGGGGCGGCATAGGGCAGCTGTACAGAGTGATAAGGATTTGTGATGATCTGTTTCTCTGCTAACTCa < 5:121210/139‑1 (MQ=255) cTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCTAACTCa < 1:19036/139‑1 (MQ=255) cTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTCATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCTAACTCa < 5:127355/139‑1 (MQ=255) | CGTACAAATCAGCAGCCTGAACAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAGATTCTAATTTTTAGAGAAAACCCGTTCATTGGAAC‑GGGTTTTTTTCATTAGACGGAGCACAGGCGTTTTGG‑TTGCTCCTAAAAATGAAAATGTGATAAAAAATCCAAGAACTTTTTTTCTTTCTTATTTTCATAAAGGGCAATCGCGTAAGCGCCGGCATAGGGCAGCTGTACAGACTGATAAGGAATTCTGATCATCTGTTTCTCTGCTAACTCA > CP006881/982970‑983245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |