Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 1,606,303 | G→A | 6.0% | V139I (GTT→ATT) | U712_08265 → | putative coenzyme A biosynthesis bifunctional protein CoaBC |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 1,606,303 | 0 | G | A | 6.0% | 222.1 / 2.3 | 67 | V139I (GTT→ATT) | U712_08265 | putative coenzyme A biosynthesis bifunctional protein CoaBC |
Reads supporting (aligned to +/- strand): ref base G (26/36); new base A (2/2); total (29/38) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.94e-01 |
TGATTGGAAAACTGGCAAACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGAAAACATCGTAAAGCTGGCCGAAAAACATTTTGCTGAAGA > CP006881/1606166‑1606433 | ttaTTGTAAAACTGGCAAAGGGCATCGCGTATGTTATGCGGACTACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTg < 2:195904/136‑1 (MQ=255) aTTGGAAAACTGGCAAACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTTTTc > 1:383864/1‑139 (MQ=255) aTTGGAAAACTGGCAAACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTc > 3:100480/1‑139 (MQ=255) aTTGGAAAACTGGCAAACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTc > 2:246893/1‑139 (MQ=255) tGGAAAACTGGCAAACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCtt > 5:105468/1‑139 (MQ=255) aCTGGCAAACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAg < 1:246893/139‑1 (MQ=255) cTGGCAAACGGCATCGCTGATGAAATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAgg < 5:53889/139‑1 (MQ=255) gCAAACGGCATCGCTGATGATATGCTGACGACAACATTGATGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGGTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGa < 2:317649/137‑1 (MQ=255) aCGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTa < 5:316528/139‑1 (MQ=255) aCGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTa < 4:100480/139‑1 (MQ=255) gCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTg < 3:103909/139‑1 (MQ=255) aTCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGtt < 2:249171/139‑1 (MQ=255) cTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTAt < 8:135575/139‑1 (MQ=255) cTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTAt < 2:383864/139‑1 (MQ=255) atgatgaTATGCTGACGAAAACATTGATGGCAGCAACGGCTCCCGTTTGGATCGCTCCTGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATGAGTACGGTTATTGTTTTAt < 8:93188/138‑1 (MQ=255) gttatGCGGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAg < 2:174341/136‑1 (MQ=255) tGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGtt < 8:310531/126‑1 (MQ=255) tGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGtt > 7:310531/1‑126 (MQ=255) gCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCATGACGGTTATTg > 2:378734/1‑123 (MQ=255) gCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTg < 1:378734/123‑1 (MQ=255) gCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGt > 8:275928/1‑139 (MQ=255) cTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGt < 6:284298/138‑1 (MQ=255) cTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGt > 4:162562/1‑138 (MQ=255) cTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGt < 6:35152/138‑1 (MQ=255) gacgacAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGt > 2:46639/1‑136 (MQ=255) gacgacAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGt < 1:46639/136‑1 (MQ=255) gacgacAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAg > 1:330574/1‑139 (MQ=255) gacAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGc > 3:3106/1‑139 (MQ=255) acaTTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGCGCCAAGTGAGGGCTAtt < 5:375885/139‑1 (MQ=255) acaTTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTAtt < 2:355108/139‑1 (MQ=255) gttgGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGc < 4:376069/138‑1 (MQ=255) ttgGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCa < 1:35305/138‑1 (MQ=255) ttgGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCa < 2:330574/138‑1 (MQ=255) ttgGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCa < 4:3106/138‑1 (MQ=255) ggCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGc > 1:219699/1‑139 (MQ=255) cagcaACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCgg < 8:217736/139‑1 (MQ=255) agcaACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGATCCAAGTGAGGGCTATTTAGCATGCGGt > 1:296843/1‑139 (MQ=255) agcaACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGc > 7:298249/1‑113 (MQ=255) agcaACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGc < 8:298249/113‑1 (MQ=255) aCGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACg < 5:301917/139‑1 (MQ=255) aCGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACg < 6:105468/139‑1 (MQ=255) cGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACg > 7:392664/1‑138 (MQ=255) cGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGt > 3:246463/1‑139 (MQ=255) ccGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGa < 2:219699/137‑1 (MQ=255) tttGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTATTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAgg < 7:223505/139‑1 (MQ=255) cgcCGGCAATGAACGTTCATATGTATGCCCACCCGGCAGTCAAACGAAACCTTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCTGTTACGTAGGAAAAGGCAGATTgg > 4:148943/1‑138 (MQ=255) ccGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAag < 2:296843/139‑1 (MQ=255) ggCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAagag < 3:118649/139‑1 (MQ=255) aTGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGc > 6:192525/1‑82 (MQ=255) aTGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGc < 5:192525/82‑1 (MQ=255) aaCGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGaa > 2:298287/1‑138 (MQ=255) ttCATATGTATGACCACCCGGCAGTCAAACGAATCATTTCTGTTCTTTATCAGGACGGTTATTGTGTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAACGGCAGATTGGAAGCGCCGGAACACAt > 2:290996/1‑139 (MQ=255) ttCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCa > 6:314020/1‑95 (MQ=255) ttCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCa < 5:314020/95‑1 (MQ=255) cATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGAAAACATCg > 4:349932/1‑139 (MQ=255) tgACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGAAAACATCGTAAAGCTg > 5:356792/1‑139 (MQ=255) caccCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACg > 6:160328/1‑91 (MQ=255) caccCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACg < 5:160328/91‑1 (MQ=255) cccGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTg < 3:297571/48‑1 (MQ=255) cccGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTg > 4:297571/1‑48 (MQ=255) cccGGCAGTCAAACGAAACATTTCTATTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGaaaa < 5:78207/120‑1 (MQ=255) cccGGCAGTCAAACGAAACATTTCTATTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGaaaa > 6:84182/1‑120 (MQ=255) cccGGCAGTCAAACGAAACATTTCTATTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGaaaa > 6:78207/1‑120 (MQ=255) cccGGCAGTCAAACGAAACATTTCTATTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGaaaa < 5:84182/120‑1 (MQ=255) ccGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGaaaa < 8:104750/119‑1 (MQ=255) ccGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGaaaa > 7:104750/1‑119 (MQ=255) cGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGAAAACATCGTAAAGCTGGCCGaaa > 3:332951/1‑138 (MQ=255) aCATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGAAAACATCGTAAAGCTGGCCGAAAAACATTTTGCTgaaga < 5:239840/139‑1 (MQ=255) | TGATTGGAAAACTGGCAAACGGCATCGCTGATGATATGCTGACGACAACATTGTTGGCAGCAACGGCTCCCGTTTGGATCGCGCCGGCAATGAACGTTCATATGTATGACCACCCGGCAGTCAAACGAAACATTTCTGTTCTTTATCAGGACGGTTATTGTTTTATTGAGCCAAGTGAGGGCTATTTAGCATGCGGTTACGTAGGAAAAGGCAGATTGGAAGAGCCGGAAAACATCGTAAAGCTGGCCGAAAAACATTTTGCTGAAGA > CP006881/1606166‑1606433 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |