Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 1,955,478 | G→T | 22.5% | intergenic (+41/+53) | U712_09675 → / ← U712_21250 | Uncharacterized protein yoeB/tRNA‑Arg |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 1,955,478 | 0 | G | T | 22.5% | 83.4 / 4.2 | 52 | intergenic (+41/+53) | U712_09675/U712_21250 | Uncharacterized protein yoeB/tRNA‑Arg |
Reads supporting (aligned to +/- strand): ref base G (12/27); new base T (11/2); total (23/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.03e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCCCTACATTAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGTATT > CP006881/1955340‑1955613 | tCCCTACATTAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTATtttgtttg > 3:81838/1‑139 (MQ=255) tCCCTACATTAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGGTTTTTTTGGGTTg > 3:309739/1‑139 (MQ=255) cccTACATTAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGGTTTttttgttttgg > 8:159089/1‑138 (MQ=255) ccTACATTAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGGTTTTTtttgtttgga > 7:85884/1‑137 (MQ=255) aCATTAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTATTTTGTTTGGATa > 8:286663/1‑138 (MQ=255) tAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTTTTTTGTTTGGATaaaga > 1:17260/1‑138 (MQ=255) aGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGGTTTATTTTTTTTGGATtaagaa > 5:238811/1‑138 (MQ=255) aCGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTTTTTGGTTTGGGtaaataaat > 8:166825/1‑137 (MQ=255) aCGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGCTATAAGCGGGCGTGGTTAATTTGGTTTGCATaaaaaaaa > 7:184445/1‑137 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCTTGGTTTATTTTGTTTGGATAAAAAAAAacaa > 4:76362/1‑138 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTTTTTTATTTTGTTTTGAtaaataaaaaaaa > 5:91310/1‑133 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTTTTTTATTTTGTTTTCATAAATAAAGacaa > 6:104845/1‑138 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTTTTTTTTTTTGTTAAAAAAAAacaa > 5:376899/1‑138 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTTATTGGTTTTGAtaaataaataaaa > 6:327943/1‑133 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTATTTGGTTTGCAAAAATAAAGaaaa > 8:334839/1‑138 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTGTTTTTTTTTTTTGATaaaaaaaaaaaa > 2:386295/1‑133 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGGTTTTTTTTTTTTTGATaaaaaaaaaaaa > 1:270178/1‑133 (MQ=255) aTCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGAGGGCGTGGTTTATTTTTTTTTTATaaaaaaaaaaaa > 7:291368/1‑133 (MQ=255) cTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTATTTTGTTTGCATAAAAAAAAACAACAGGCg > 1:332813/1‑139 (MQ=255) cTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTATTTTGTTTTAATAAATAAAAACAACAGGAGaa > 6:395947/1‑138 (MQ=255) gCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTTTTTTTTTTGAATTAAAAATAAAAACAAGCGAAAAg > 4:141460/1‑139 (MQ=255) cctaaaGTCAAATTTGTCAAAAAAAAAAAAAAATGCACACCAAAACAATTTGACCCTTTAATAAA‑ACAAAAACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCtg < 2:145508/136‑1 (MQ=255) cGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGGTTTTTTTGTTTTTGATAAAGAAAGAAAAAACGCGAAAAGTGccgg > 4:136227/1‑137 (MQ=255) aGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTGTTTTTTTTTTTTTGGATTAAAAAACACAAAAGCCGAAAACAGCCagttgt > 7:101230/1‑138 (MQ=255) cATTGGTCAAATAAAAAAAAAAACGCAAAGCCAACCAATTGCACCAAGTTATAAA‑ACAAACACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCttttt < 5:375257/139‑1 (MQ=255) acaaaaTAAAACATGCAAAGTAAATAAATTTCACCCATTTAAAAA‑ACAAAAACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATaa < 2:271016/137‑1 (MQ=255) aaaaaaaaaaaaATGTAAATTCAATAATTTTGACGCATTTTTATA‑ATAAACACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATaa < 8:284082/137‑1 (MQ=255) aaaaaaTAAAAATGGCAAAGTAAATAAATTTGCTGTTTTTA‑ATACAGACCAACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATaa < 7:286663/137‑1 (MQ=255) aaaaaaaaaaCTGAAAATTAAATAAATTTCACGCATTTAAAAA‑AAAAACACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACg < 5:153268/139‑1 (MQ=255) aaaaaaaaaaATGCAAAGTCAAACAATTTGACGCAGTAATAAA‑ACAAACACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACg < 7:141565/139‑1 (MQ=255) cattatttATATA‑ACAACAACGCCCGGTATACGCGGGCGTTTTTTATTTGGTTTTCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTg < 4:42464/132‑1 (MQ=255) cGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTTTTTTTTTTTGTTTGGATAAATAAAAAAAACACGCGAAAAATGCCTGGTGGATTTTTTTTTATATAAAGCTCTAGGAGAGATTCGAAATCCCGAccaaca > 2:250757/1‑135 (MQ=255) tata‑ACAAACACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGa < 1:250757/139‑1 (MQ=255) tata‑ACAAACACGCCCGGGATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGa < 6:66513/139‑1 (MQ=255) aaaaacaaacaCGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGa < 4:349643/133‑1 (MQ=255) aaacaaacaCGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGaaa < 7:159089/135‑1 (MQ=255) gAAAAACGCCCGGTATAAGCGGGCGTGTTTTATTTTGTTTTGATAAATAAAAAAAAAACGCGAAAAATGCCGGTTGTGTTTTTTTGTATATTACGCGATATGAGACCTTCGCACAGCCCACCTGCACTTTTGGCAActg > 6:147726/1‑139 (MQ=255) aacaCGCCCGGTATACGCGGGCGTTTTTTATTTTGTTTGCATAAAGAAAGACAACAGTCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCGCTAGGAGAGATTCGAACTCCCGACCTGCAGGTTAGGAAActgct < 5:82158/136‑1 (MQ=255) cGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTTGATAAATAAAGACAACACGCGAAAAGTGGCTGTTGGCGTTTTGGTAATATAACGCTCGACGAGAGCATAGAACAACCCAACAGCACTTTAGGAAACTGCTGCa > 8:476/1‑138 (MQ=255) gCCCGGTATAAGCGGGCGTTTTTTTTTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACt < 5:293679/139‑1 (MQ=255) gTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCg < 3:55491/139‑1 (MQ=255) tataAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGc < 4:81838/139‑1 (MQ=255) taAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCtg < 3:273350/139‑1 (MQ=255) aGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCtgtg < 7:364586/139‑1 (MQ=255) aGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCtgt < 8:85884/138‑1 (MQ=255) tttGGTTTGCATAAAGAAAGACAACCGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCtttt < 6:238811/138‑1 (MQ=255) tttGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCtttt < 7:47209/138‑1 (MQ=255) tttGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCtttt < 3:389797/138‑1 (MQ=255) tttGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCtttt < 1:21465/138‑1 (MQ=255) ggTTTTCATAAAGAAAGACAACAGGCGAATAGTGACTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGt < 8:101230/138‑1 (MQ=255) ggTTTGCATAAAGAAAGACAACAGGCGATTAGTGCCTGTTGTCTTTTTGTGAATATAACGCTGTTGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGATGCACTATCAGCTGTGCTACTAGAGCTTTTGGt < 7:86975/138‑1 (MQ=255) ggTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGt < 7:291461/138‑1 (MQ=255) ggTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGt < 2:318838/138‑1 (MQ=255) gTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGTa < 5:147726/138‑1 (MQ=255) gTTTGAATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGTAt < 2:235401/139‑1 (MQ=255) ttGCATAAAGAAAGACAACAGGCGAAAAGTGCCAGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGTAtt > 3:226498/1‑138 (MQ=255) | TCCCTACATTAGACGGATCCCCTTCTGCAAAACGGAAAGTGACATTTGTGAAAGAAAATAAAAAATGGAAAGTCAATCAATTTGACGCAGTTATATA‑AGAAAAACGCCCGGTATAAGCGGGCGTTTTTTATTTGGTTTGCATAAAGAAAGACAACAGGCGAAAAGTGCCTGTTGTCTTTTTGTGAATATAACGCTCTAGGAGAGATTCGAACTCCCGACCTGCAGTTTAGGAAACTGCTGCACTATCCGCTGTGCTACTAGAGCTTTTGGTATT > CP006881/1955340‑1955613 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |