Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP006881 | 2,628,932 | T→C | 6.3% | K207K (AAA→AAG) | U712_13535 ← | Putative cysteine desulfurase IscS 1 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006881 | 2,628,932 | 0 | T | C | 6.3% | 186.8 / 3.3 | 64 | K207K (AAA→AAG) | U712_13535 | Putative cysteine desulfurase IscS 1 |
Reads supporting (aligned to +/- strand): ref base T (31/28); new base C (2/2); total (34/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCTTGATCGCTTCTTTCAGCCCGACAATGCCTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCACCGAT > CP006881/2628799‑2629069 | gCTTGATCGCTTCTTTCAGCCCGACAATGCCTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTgg < 4:204131/139‑1 (MQ=255) gATCGCTTCTTTCAGCCCGACAATGCCTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGcc < 3:39625/137‑1 (MQ=255) gATCGCTTCTTTCAGCCCGACAATGCCTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGcc < 2:19443/137‑1 (MQ=255) cccGACAATGCCTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCg > 2:31404/1‑139 (MQ=255) acagcAATGCCTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCgg < 1:147020/135‑1 (MQ=255) accaggCCTGGAACAATTTCCGTTCCGGCACGGCGGTTGCTTGCTTGCTCTCCTCCGAATAACCGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGATGAGCTTGTGCCCGGaac < 2:160534/134‑2 (MQ=255) ccTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCTCATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGTAacagaca < 2:86505/139‑1 (MQ=255) cTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAacagacag < 7:209890/139‑1 (MQ=255) gAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAg < 1:168264/139‑1 (MQ=255) aCATTTTCCGTTCCGGCACGGCGTGTTCTTTTTTGGTATACTCCGAATAAAATGGGTGAAAGCTTCACATAATTAAGAGCATAAAAAAATCCTGTCCCGTTTTGCCCGTTGAGCTTGTGCCCGGCAacacacagccaga > 2:147020/1‑134 (MQ=255) tttCCGTTCCGGCACGGCGTTTTCTTTCTTTCTCTCATCCGAATAAAATGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCATTTTGGCCCGTTGAGCTTGTGACCGGAAACAGAAAGAAGGTCaa > 6:16922/1‑138 (MQ=255) tttCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCaa > 5:244640/1‑138 (MQ=255) tttCCGTTCCGGCACGGCGTTTTCTTTCTTGCGAACCTCCGAATAAAAGGGGTGAAAGCTTCACCTCTTTACTAGCATATAAAAAGGCTGTCCCTTTTGGGCCGGTGAGCTTGTGGCCGGAAACAGACACCAGGTCaa > 6:291861/1‑138 (MQ=255) cgttccgGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACAACTTTACTAGCATATAAAAAGCCTGTCCCCTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATgg > 2:112630/1‑139 (MQ=255) gttccgGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGACCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGc > 8:272588/1‑139 (MQ=255) cGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTca < 7:329630/139‑1 (MQ=255) gCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTcaca < 6:244640/139‑1 (MQ=255) tGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGgcagc > 4:12115/1‑138 (MQ=255) gCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCCTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGgcagca < 1:112630/138‑1 (MQ=255) tcctccGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTAGCGCTTGTGCCCGGAAACAGCCAGAAGGTCAATATGGCGCTTTTTCACATCAATTGGCAGCAAccc > 8:311662/1‑138 (MQ=255) tcctccGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCCTTTGGCCCGTTGAGCTtg > 1:151206/1‑79 (MQ=255) tcctccGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCCTTTGGCCCGTTGAGCTtg < 2:151206/79‑1 (MQ=255) tcctcaGAATAACATGGGTGTAAGCTTCACATCTTTACTAGGCTATAAACATCCTGTCCCTTTTGGCCCGTTGAGCTTGTGGCATGAATCAGACAGACGGTGAATATGACTGTTTTTCAGATCAATTGGCAGCAACCCg < 4:250873/139‑1 (MQ=255) ctccGAATAAAAGGTGTGATAGCTTCACATCTTTAGTAGCATATTAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGATGTGCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCg < 6:296150/137‑1 (MQ=255) ctccGAATAAAAGGTGTGAAAGCTTCACATCTATTATAGCATATAAAAAGCCAGACCCTATTGGCCCGTTGAGCTTGTGCCAGGAAACAGCCAGAAGCTCAATATGGCTGTTTTTCACATCAATTGGCAGCAAcccta > 4:14694/1‑136 (MQ=255) ctccGAATAAAAGGGGTGAAAGCTTCACATCTTTGCTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCg < 7:59574/137‑1 (MQ=255) ctccGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGaa > 3:360185/1‑139 (MQ=255) ctccGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGaa > 8:346808/1‑139 (MQ=255) ctccGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGGTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCg < 5:22172/137‑1 (MQ=255) ctccGAATAAAAGGCGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCg < 8:109775/137‑1 (MQ=255) aaTAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCt > 3:30876/1‑139 (MQ=255) aaaaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGaa < 3:198256/139‑1 (MQ=255) aaaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGaa < 7:346808/138‑1 (MQ=255) aaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTg > 2:45745/1‑100 (MQ=255) aaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTg < 1:45745/100‑1 (MQ=255) aaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGaa > 8:237640/1‑137 (MQ=255) aaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGaa > 5:381051/1‑137 (MQ=255) aaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGaa > 7:14694/1‑137 (MQ=255) aaGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGaa > 1:45851/1‑137 (MQ=255) gTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATc > 8:211897/1‑139 (MQ=255) aaGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTa < 7:88922/139‑1 (MQ=255) aGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCg < 8:8381/117‑1 (MQ=255) aGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCg > 7:8381/1‑117 (MQ=255) ttCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATgg > 2:289578/1‑84 (MQ=255) ttCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATgg < 1:289578/84‑1 (MQ=255) tACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCttt > 6:133813/1‑139 (MQ=255) cTAGCATATAAAAAGGCTGTCCCTGTTTGCCCGTTGATCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTtgt < 5:16922/139‑1 (MQ=255) cTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTtgt < 2:45851/139‑1 (MQ=255) gCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGttttt < 7:162001/77‑1 (MQ=255) gCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGttttt > 8:162001/1‑77 (MQ=255) atatAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTcc > 6:212452/1‑139 (MQ=255) tataAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCt > 6:115003/1‑139 (MQ=255) tataAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCt > 1:231825/1‑139 (MQ=255) aaaaGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTaa < 2:220912/139‑1 (MQ=255) tGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTTGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCa > 7:291249/1‑139 (MQ=255) tGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCa > 1:146428/1‑139 (MQ=255) gTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCAc > 7:182243/1‑139 (MQ=255) gTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCAc > 2:59826/1‑139 (MQ=255) tCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCa < 7:272588/137‑1 (MQ=255) tCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCAcc > 4:6175/1‑139 (MQ=255) tCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCAcc > 3:274780/1‑139 (MQ=255) tCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCAcc > 3:158453/1‑139 (MQ=255) ccTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCACCg < 4:274780/138‑1 (MQ=255) cTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCACCGAt < 7:211897/139‑1 (MQ=255) | GCTTGATCGCTTCTTTCAGCCCGACAATGCCTGGAACATTTTCCGTTCCGGCACGGCGTTTTCTTTCTTGCTCTCCTCCGAATAAAAGGGGTGAAAGCTTCACATCTTTACTAGCATATAAAAAGCCTGTCCCTTTTGGCCCGTTGAGCTTGTGCCCGGAAACAGACAGAAGGTCAATATGGCTGTTTTTCACATCAATTGGCAGCAACCCGAATGCCTGAACAGCATCGGTATGAAAATAAGCTTTGTGTTCCTTTAACAGCTCACCGAT > CP006881/2628799‑2629069 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |