| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,444,703 | A→C | 19.4% | V43G (GTC→GGC) | U712_17685 ← | UPF0750 membrane protein yvjA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,444,703 | 0 | A | C | 19.4% | 111.3 / 8.8 | 78 | V43G (GTC→GGC) | U712_17685 | UPF0750 membrane protein yvjA |
| Reads supporting (aligned to +/- strand): ref base A (46/16); new base C (5/10); total (51/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.05e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAAGCGTCTTTAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCCATCATATATCCTC > CP006881/3444574‑3444838 | gCAAGCGTCTTTAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGCTCCCGCTGACCCCGCc‑gg > 8:217545/1‑139 (MQ=255)gCAAGCGTCTTTAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑gg > 5:244451/1‑139 (MQ=255)gCAAGCGTCTTTAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGATGACCCCGCc‑gg > 2:63401/1‑139 (MQ=255) cAAGCGTCTTTAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑ggc > 2:236233/1‑139 (MQ=255) aGCGTCTTTAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑ggcgg < 7:110190/139‑1 (MQ=255) aGCGTCTATAGTCCAAATCTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑ggcgg < 1:139121/139‑1 (MQ=255) cGTCTTTAGTCCAAATTTCCCGCCGCGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGCCCCCGCC‑ggcggc > 1:405504/1‑138 (MQ=255) tttAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCt > 5:350825/1‑139 (MQ=255) ttaccccccTAGCAAAATCACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGc < 1:349119/136‑1 (MQ=255) ccgccgAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCaaaa < 6:190006/139‑1 (MQ=255) cgccgAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCaaaaa < 7:284237/139‑1 (MQ=255) cgccgAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCaaaaa < 6:276050/139‑1 (MQ=255) cgccgAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCaaaaa < 6:395913/139‑1 (MQ=255) cgccgAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCaaaaa < 2:38639/139‑1 (MQ=255) cGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGacac > 7:216406/1‑139 (MQ=255) cGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATACCGCTGACCCCGCC‑GGCGGCAATCATATTCGGAAGAAAAAATAC‑ATTAAAGGacac > 5:173929/1‑139 (MQ=255) aGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCgctgct > 6:311503/1‑139 (MQ=255) gtcaaatTAATAATCCACTGTACATACTCTGATTCAAAAAAAAAATATTTAAAAATCGTACTGATCACGCTGACAACGCC‑GAAGACAATCTAAATCTGAAGCAAAAATAC‑AATAAAGTACACGGCCTTAATAgctgct > 6:380291/6‑138 (MQ=255) aaaaaaccACTTTACATACGCTGCTAAAAAACCATATGTTTTTAAAATCGTACTGATCCCGCTCCCCCCGCC‑GGCGCAAATATTATCCGCAACAAAAAAAAC‑ATAACAGCACACGGCCGTAATCGCTGCTCCTATCAat < 8:382124/133‑1 (MQ=255) aaaaaaccACTTTAAATACGCTTCTACAAAAAATTTTTATTTAAAAAGCGCACTTCCCCCGGTCCCCCCGCC‑GGGGGAATTATTTTTCAGAATAAAAAAAAA‑ATTAAAGCCCACGGCCGTAATCGCTGCTCCTATCaa < 6:350825/132‑1 (MQ=255) gccacgtGTACATCCGATGCTTAAAAACAATTTTATTATAAATGCGAACGGACCCCGCTGCCCCCGCG‑GGCGCCAATCTTATTGGTAACAAAAAAAAA‑ATTAACGCCCACGGCCGTAATCGCTGCTCCTATCAATATGt < 6:217591/133‑1 (MQ=255) atCCACTGTACATACGCTGCTTCAAAACCATATTATTTTAAAATCTTACTGATCCCGCTGACACCGCC‑GGCGGCAATCTTATTCTGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATg > 8:361537/1‑138 (MQ=255) atCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGCCCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCAGCTACTAGCAATATg > 3:36617/1‑138 (MQ=255) atCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCAGTAATCGCTGCTCCTATCAATATg > 4:79146/1‑138 (MQ=255) tCCCCTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGta > 5:166945/1‑139 (MQ=255) tCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGta > 4:193355/1‑139 (MQ=255) tCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCCGAAGCAAAAAAAC‑ATTAAAGGACACCGCCGTAATCGCGGCTCCTATCAATATTta > 1:311915/1‑139 (MQ=255) aCTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGCCCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGtata > 4:373476/1‑138 (MQ=255) cTGTACATACGCTGCTTCAACACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACa > 4:354815/1‑139 (MQ=255) cTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGCCCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACa > 5:123437/1‑139 (MQ=255) cTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACa > 5:102772/1‑139 (MQ=255) tGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑ggcgg < 1:88398/67‑1 (MQ=255) tGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑ggcgg > 2:88398/1‑67 (MQ=255) tGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACa > 8:373644/1‑138 (MQ=255) aCATCCGCTTCTTAAAAACAATATTATTTAAAAATCGTACTGACCCCGCTGCCCCCGCC‑GGCGCAAATCTTATTCGCAACAAAAAATAA‑ATAAAAGCCCACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAAt < 8:130686/139‑1 (MQ=255) tACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑gg < 2:36535/58‑1 (MQ=255) tACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑gg > 1:36535/1‑58 (MQ=255) aCGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCaaaaa > 7:22944/1‑82 (MQ=255) aCGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCaaaaa < 8:22944/82‑1 (MQ=255) aCGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGCCACGTCCGTAATCGCTGCTCCTAACAATATGTATACATAATctgt > 7:165300/1‑136 (MQ=255) aCGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCg > 1:310062/1‑139 (MQ=255) ctgctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCa > 8:10248/1‑138 (MQ=255) ctgctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCACCTATCAATATGTATACATAATccctgtc > 5:217591/1‑135 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGCCCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACCCGGCCGTAATCGCTGCGCCTATCAATATGTATACATAATCCCGCaaaa > 3:92425/1‑139 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCGGCc‑ggcgg < 5:268889/55‑1 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCc‑ggcgg > 6:268889/1‑55 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCg > 7:378061/1‑67 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCg < 8:378061/67‑1 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGa > 7:39832/1‑69 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGa < 8:39832/69‑1 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATTTATACATAATCCCGCaaa > 2:404341/1‑138 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCaaaa > 5:76581/1‑139 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCaaaa > 5:67722/1‑139 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCaaaa > 7:130686/1‑139 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCaaa > 1:186825/1‑138 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCaaa > 7:208928/1‑138 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCaaa > 6:126852/1‑138 (MQ=255) gctTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCaaa > 5:281600/1‑138 (MQ=255) aaacattattatTTTAAAATCGTAGTGATCCCGCTCCCCCCGCC‑GGGGCAAATATTAATCGCAATAAAAAAAAA‑ATTAAACGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCcaca < 5:147234/133‑1 (MQ=255) aaaaaatatTATTTTAAAATCGTCCTGAACCCGCGGCCCCCGCC‑GGCGCAAATCTTATTCGCAACAAAAAAAAC‑ATAAAAGCCCACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCcaca < 7:373644/134‑1 (MQ=255) aaaaCATATGATTGAAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGAAATATTATTCGGAACAAAAAAAAA‑ATTAAAGCACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCcaca < 6:102772/139‑1 (MQ=255) aaaCCATATTATTGTAAAATCGTACTTATCCCGCTGCCCCCGCC‑GGGGTAAATAATAATCGAAACAAAAAATAA‑ATAACAGCCCACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCcaca < 1:334238/139‑1 (MQ=255) aaaCAATATTTTTGTAAAATCGTACTCACCCCGCTCCCCCCGCC‑GGCGGAAATATTATTCGGAATCAAAAAAAA‑ATTAAAGCCCACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCcaca < 4:149282/139‑1 (MQ=255) tattatTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGAGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTACTATAAATATGTATACAAAATACCGCAAAATCCACAAGGttt > 8:235114/1‑139 (MQ=255) tAAAATCGTTCTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACATTGTTTTATTCCGt > 8:105457/1‑139 (MQ=255) tAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTcag > 7:312124/1‑136 (MQ=255) tAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCg > 6:86018/1‑138 (MQ=255) tAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCg > 1:221669/1‑138 (MQ=255) ttCGTCCTGATCCGGGTTCCCCCGCC‑GGCTGAAATTTTATTCGTAACAAAAAATAC‑ATTAATGGCCACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGt < 8:312124/138‑1 (MQ=255) aTCGTACTCAACCC‑CCGGCCCCGCGGGGCGTCATTCTTATTCGTAA‑CAAAAAAACAATTACAGCACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGt < 6:123437/139‑1 (MQ=255) gTACTGACCCCGCGCCCCCCGCC‑GGCGGCAATCTTATTCGCAACAAAAAAAAC‑ATAAAAGCCCACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTcc < 6:115659/138‑1 (MQ=255) tACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTTAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCcat > 6:405381/1‑139 (MQ=255) tACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCcat > 8:249967/1‑139 (MQ=255) aTCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCCATCata > 8:176100/1‑138 (MQ=255) gcggACCCCGCC‑GGCTGAAATATTATACGGAAACAAAAAAAA‑ATTAAAGCCCACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCCATCATATAtcct < 5:311503/136‑1 (MQ=255) gCTGACCCCGCC‑GGCGGCAATCTTTTTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTGCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCCATCAGATTtcc > 2:156137/1‑138 (MQ=255) gCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCCATCATATAtcct > 7:235411/1‑139 (MQ=255) cTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCAGTAATCGCTGCTCCAATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTGCGTACGTCCATCATATAtactc > 4:352665/1‑139 (MQ=255) | GCAAGCGTCTTTAGTCCAAATTTCCCGCCGAGCAAAATGACGCCAGCAATAAATAAAGGGATATTAATAATCCACTGTACATACGCTGCTTCAAAACCATATGATTGTAAAATCGTACTGATCCCGCTGACCCCGCC‑GGCGGCAATCTTATTCGGAAGCAAAAATAC‑ATTAAAGGACACGGCCGTAATCGCTGCTCCTATCAATATGTATACATAATCCCGCAAAATCCACAATGTTTTATTCCGTACGTCCATCATATATCCTC > CP006881/3444574‑3444838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |