| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP006881 | 3,676,319 | C→A | 11.0% | E142* (GAA→TAA) | U712_18940 ← | Putative HTH‑type transcriptional regulator ywgB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006881 | 3,676,319 | 0 | C | A | 11.0% | 211.8 / 2.9 | 92 | E142* (GAA→TAA) | U712_18940 | Putative HTH‑type transcriptional regulator ywgB |
| Reads supporting (aligned to +/- strand): ref base C (32/47); new base A (10/3); total (42/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.80e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCACCCTCAAATA > CP006881/3676185‑3676447 | ttGCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGa < 6:265802/139‑1 (MQ=255) gacATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATTCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTAATTTTAAATACAATTTACCTTTAAATTTCATCATTACCCAATCATATATTTTTTAAAGaa > 6:353802/3‑137 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTTTTTTTGATTACAATTTCCCTTTCACTTGCTTGATTACCCAATAATGTATTTTTTAAAGAt > 3:25645/1‑138 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTTCTTGATAACCCAATCATCTATTTTTTCAAGAt > 3:394725/1‑138 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCaa > 4:386028/1‑135 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCaa < 3:386028/135‑1 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAatat > 5:85130/1‑138 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGAt > 1:273415/1‑138 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGAt > 6:408799/1‑138 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCGTGATTACCCAAACATCTAATTTTTAAatat > 5:124368/1‑138 (MQ=255) gCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAAATGCCCTTTCAATATCGTGATTACACAATCATCAATTTTTTCAAGAt > 5:52084/1‑138 (MQ=255) aGGAAACCAAGTGCGATCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCAGCTATTTTTCATTACACTTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACaa < 8:92588/139‑1 (MQ=255) aGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACaa < 5:408799/139‑1 (MQ=255) ggAAACCAAGTGCGAGAACGATCAGCACGGATATGCCTGTTTTTGATGTTGATTCTTGTATAGTCCCGATTTTTTTCATTACAATTGGGATTTCACTTGCTTGATTACCCATTATTATTTTTTTTCAAGATCATACaa < 2:360042/138‑1 (MQ=255) aaCAAAGTGCGCTCACTATCACACCGGATATGCCGTTTGATGATGTTTTTTCTTGAATAGCCCCGCTATTTTTCAATACAATTCCCCTTTAACTTGCTTGATTACCCAATCATATATTTTTTAAAGATCATAAAATTcc < 6:305771/139‑1 (MQ=255) aGTGCGAGCACGATCAGCACGGATTTGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCAATTTTTCATTACCATTGCCCGATCACTGGCATGATTACCCAATCATCTATTTTTTATAGATCATACAATTGCCCgcc > 3:326631/1‑137 (MQ=255) gtcgcaGCACGATCAGCCCGGATATGCCTGTTGATGATGTTGATTCTTGTAAACACCCGCTATTTTTCATTACATTTGCCCTTTCACTTGCTTGATAACCCAATAATCTATTTTTCCAATATCATACAATTCCCCGAct < 4:25645/134‑1 (MQ=255) gTGCGCGCACGATCAGCACGTAAATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATAACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGAct < 7:102368/139‑1 (MQ=255) gTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTTTTTTTTCAAGATCATACAATTCCCCGAct < 8:222270/139‑1 (MQ=255) gTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGAct < 8:21991/139‑1 (MQ=255) gTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGAct < 4:340710/139‑1 (MQ=255) gTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTAAAATTGCCCTTTCACTTGCTTGTTTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGAct < 7:25742/139‑1 (MQ=255) tgggAGCACGATCAGCACGGATATGCCTGTTGTTGATGTTTATTCTTGTATAGACCCGCTATTTTTAATTACATTTGCCCTTTCACTTGCTTTTTTACCCAATCAACTATTTTTTCAAGATAATACAATTCCCCGAct < 5:353802/135‑1 (MQ=255) tGCGAGCACGATCAGCACGGATATGCGTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGAct < 1:278112/138‑1 (MQ=255) aactaGCACGATCAGAACGGATATGCCTGTTGATTATTTTGATTATTTTATATACCCGCAATTTTTAATTACATTTGCCCTTTCACTTGCTTGATTACCCAATCATATATTTTTTCAATATAAAAAAATTCCCCGActc < 5:233231/135‑1 (MQ=255) aGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTTATTACCCAAACATCTATTTTTTCAATATAAAACAATTACCCGACGCTggc > 1:182167/1‑137 (MQ=255) aGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTGTCACTTGCTTGATTACCCAATCATCTATATTTTCAAGATCATACAATTCCCCGACTCTgga > 8:288744/1‑137 (MQ=255) aGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTAATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCAACAATTTTTTAAATATAATAAAATTGCACGACTCTGTc > 1:191047/1‑139 (MQ=255) cACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGa < 1:30577/114‑1 (MQ=255) cACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGa > 2:30577/1‑114 (MQ=255) cACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCAATTGCTTTATTACCCAATCATCTATTTTTTAAAGATCATACAATTCACAGACTCTGTCAAAAAccctgt > 6:233231/1‑134 (MQ=255) cGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCAATACAAATGCCCATTCACTTGCGTGCTTACCCAATCAAATAATTTTTCAAGTACATACAAATAACCGCCTCTGTGCAATACAtgcag > 6:129456/1‑136 (MQ=255) gATTTGCCTGTTTTTGATGTTGTTTCTTGTATTGCGCCGCTTTTTTTCTTTATAATTGCCATTTCAGTTGATTTATTAACAAATCATATTTTTTTTATACATCTTACATTCCCCCGACTCTGTCCATAACATGCTGCaa < 2:191047/139‑1 (MQ=255) gATATGCCTGTTTTTGATTTTTTTTGTTGTTTCGACCCGTTATTTTTCATTACATTTGCCTTTTCATTTGCTTTATACCCAAATAATTTTTTTTTAAAAGAAAATACAATCCCCCGACTCTGTCCATAACATGCTGCaa < 2:182167/139‑1 (MQ=255) gATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCaa < 1:74074/139‑1 (MQ=255) gATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATAATACAATTCCCCGACTCTGTCCATAACATGCTGCaa < 5:386485/139‑1 (MQ=255) atatGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTAAAGATAATACAATTCCCCGACTCTGTCCATAACATTCTGCAAg > 6:238881/1‑139 (MQ=255) tGCGTGTTGTTTTTGTTGTTTCTTGTATAGACCCGTTATTTTTAATAAAAATTGCCATTTCAATTGCTTGATTACCCTATCATATTTTTTTTCAATATAATAAAATTCCCCGACTCTGTCCATAACATGCTGCAAGGa < 6:124368/138‑1 (MQ=255) ccTGTTGATGATGTTGATTCTTGTATAGACCCGCTTTTTTTGATTTAAATTTGCCTTTGACTTGCTTGATTTCCCAATCATCTATTTTTTAAAGGTGATAAAATTGCCCCACGAGGTCCATAAAATTCTGCAAGGGttg > 2:15953/1‑138 (MQ=255) ccTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCa < 6:113870/120‑1 (MQ=255) ccTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCa > 5:113870/1‑120 (MQ=255) ccTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGAttc > 5:154401/1‑139 (MQ=255) ccTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTACCCGACACTGTACATAAAATGCTGGAAGGAttc > 4:346299/1‑139 (MQ=255) ccTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTAATTACAATTGCCCTTTAACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGCCTCTGTCCATAACAGGCTGACAGGAgtc > 6:354501/1‑139 (MQ=255) gttttatgttgTTTATTGTTGTATATACCCGCTATTTTTCATTACAATTGCAATTTCACTTGGTTTATTACCCAATCTTCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGAttctt < 8:232898/134‑1 (MQ=255) ttGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATtcttct > 1:133657/1‑139 (MQ=255) ttGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTA‑TTTTTAAAGATAATAAAATTACCCCACTCAGGGCATAAAAAGCTTCAAGGAgtattc > 6:314374/1‑137 (MQ=255) ttGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATAATCTATTTTTTCAAGATCATACAATAACCCGAATCTGTCCATAACATGCTGCAAGGAttcttat > 7:29462/1‑137 (MQ=255) ttGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTAAAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTAAAGATCATACCATTCCCCGACTCTGTCCAGAACATTCAGCAAGGAttcttc > 7:156737/1‑138 (MQ=255) ttGATGATGTTGATTCTTGAATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGAttcttc < 7:378171/138‑1 (MQ=255) tatgTTTATTCTTGTATAGACCCGATATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCAAATCATCTATTTTTTCAATATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCa < 3:346299/137‑1 (MQ=255) gatgTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAATATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCa < 6:246559/138‑1 (MQ=255) gatgTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCa < 6:85130/138‑1 (MQ=255) ttGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGAc > 6:392774/1‑138 (MQ=255) tGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGAcc > 3:113792/1‑138 (MQ=255) aCCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATcc > 6:163413/1‑139 (MQ=255) cccGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCt < 2:133657/139‑1 (MQ=255) ccGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCAGTTTTCCTc > 8:69817/1‑139 (MQ=255) ccGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCGATTTTTTCAAGATCATACAATTCCCCGCCTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATACTc > 5:320237/1‑139 (MQ=255) gCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATACTCGa > 2:47716/1‑139 (MQ=255) cTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACa < 5:292110/92‑1 (MQ=255) cTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACa > 6:292110/1‑92 (MQ=255) cTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGAt > 5:153610/1‑139 (MQ=255) taaTTACAATTCCCCTTTCACTTGCTTTATAACAAAATAATCTTTTTTTTCAAGATCAAACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGc < 6:284806/136‑1 (MQ=255) aTTACAATTGCCATTTCACTTGATTGATTACCCAATCATCTATTTTTTCAAGATCAAAAAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCa < 3:155069/138‑1 (MQ=255) tACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGa > 7:342361/1‑139 (MQ=255) tACAATTGCCCTTTCACTTGCTTCATAACCCAATCATCTTTTTTTTCAAGATCATACATTTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCa < 5:129456/136‑1 (MQ=255) aaaaTTCCCCTTTAAATTGCTTTATTACAAATTCATATA‑TTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACt < 5:314374/137‑1 (MQ=255) aCAATTGCCCTTTCACTTGCTTGATTACCAAATCATATATTTTTTCAAGAACATAAAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGa < 6:52084/138‑1 (MQ=255) cAATTGCCCTTTCACTTGCTTGATTCCCCAATCATCTATTTTTACAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACt < 5:16415/139‑1 (MQ=255) cAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGCCTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACt < 1:363884/139‑1 (MQ=255) aaaTTGCACTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACt < 1:138680/138‑1 (MQ=255) cccTTTCACTTGCTGGATAACCCAAGAATCAATTTTTACAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGtctc < 6:242308/138‑1 (MQ=255) cTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATtcttct < 7:155032/89‑1 (MQ=255) cTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATtcttct > 8:155032/1‑89 (MQ=255) ttCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGca > 2:50895/1‑139 (MQ=255) gcttgATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCa > 6:333911/1‑117 (MQ=255) gcttgATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCa < 5:333911/117‑1 (MQ=255) gcttgATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGt < 7:106643/124‑1 (MQ=255) gcttgATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGt > 8:106643/1‑124 (MQ=255) cttgATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGACTCCAGCCCACAGTgc > 6:206444/1‑138 (MQ=255) aTTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACt < 5:167446/117‑1 (MQ=255) aTTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACt > 6:167446/1‑117 (MQ=255) ttACCCAATCATCTATTTTTTCAAGATCATACAATTACCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTc > 7:65087/1‑139 (MQ=255) aaccAATCATCTATTTTTTCATGATCATACTATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCTTGACTGTCTCCAGCACACAGTGACTTTCa < 4:394725/136‑1 (MQ=255) aCCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCa < 6:153610/138‑1 (MQ=255) aCCCAATCATCTATTTTTTCAAGATCATAAAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCa < 7:49506/138‑1 (MQ=255) aCCAAATCATCTTTTTTTTCAATATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCATCTCTCATCAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGGCTCCAGCACACAGTGACTTTCa < 4:326631/138‑1 (MQ=255) cccAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCAcc < 4:113792/139‑1 (MQ=255) cccAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCAcc < 5:163413/139‑1 (MQ=255) ttttttCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCACCCTCAAATa < 5:392774/135‑1 (MQ=255) ttttttCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCACCCTCAAATa < 2:273415/135‑1 (MQ=255) | TTGCCATGAGGAAACCAAGTGCGAGCACGATCAGCACGGATATGCCTGTTGATGATGTTGATTCTTGTATAGACCCGCTATTTTTCATTACAATTGCCCTTTCACTTGCTTGATTACCCAATCATCTATTTTTTCAAGATCATACAATTCCCCGACTCTGTCCATAACATGCTGCAAGGATTCTTCTCTCATAAGATTGGACCATTTATCCTCGATTTCCGCCATGACTGTCTCCAGCACACAGTGACTTTCACCCTCAAATA > CP006881/3676185‑3676447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |